Author

M. Baker

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Cell Biology· 2 Scientific Communication & Education· 2 Bioengineering· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Research Focus:cell signaling & trafficking· 2 Research Focus:cell type annotation· 2 Organism:Arabidopsis· 1 Organism:bacteria (other)· 1 Assay:cryo-EM· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

A. Ahluwalia· 2 shared A. Clark· 2 shared C. J. MacCallum· 2 shared D. W. Howells· 2 shared E. S. Sena· 2 shared F. Rawle· 2 shared H. Würbel· 2 shared I. C. Cuthill· 2 shared

Activity by Year

2019-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersScientific Communication & Education

A. Ahluwalia

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Author profile →

10 papers

Recent·Most cited

Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone

C. Puente-Lelievre, A. J. Malik, J. Douglas, D. Ascher, M. Baker, J. Allison, A. M. Poole, D. Lundin, M. Fullmer, R. Bouckaert, H. Kim, M. Steinegger, N. J. Matzke

This paper uses tertiary-interaction characters to improve structural phylogenetics beyond the twilight zone, achieving accurate results with fast computation.

bioRxiv · Dec 12, 2023 · PreprintEvolutionary Biology

Avian influenza viruses in wild birds in Canada following incursion of the highly pathogenic H5N1 virus from Eurasia in 2021/2022

J. A. Giacinti, A. V. Signore, M. E. B. Jones, L. Bourque, S. Lair, C. Jardine, B. Stevens, T. Bollinger, D. Goldsmith, British Columbia Wildlife AIV Surveillance Program (BC WASP), M. Pybus, I. Stasiak, R. Davis, N. Pople, L. Nituch, , Thompson

This study tracks the spread of HPAIV H5N1 in Canadian wild birds after its 2021/2022 incursion, finding widespread infection across species and regions.

bioRxiv · Nov 23, 2023Zoology

CEP76 is a critical regulator of male germ cell transition zone function and tail composition

B. J. Houston, D. J. Merriner, G. G. Stathatos, A. E. O'Connor, A. M. Lopes, D. F. Conrad, M. Baker, J. E. Dunleavy, M. K. O'Bryan

This study identifies CEP76 as essential for male germ cell transition zone function, affecting sperm tail composition and motility by regulating protein entry and structural integrity.

bioRxiv · Mar 8, 2023 · PreprintCell Biology

Antimicrobial resistance in dairy slurry tanks: a critical point for measurement and control

M. Baker, A. D. Williams, S. P. T. Hooton, R. Helliwell, E. King, T. Dodsworth, R. M. Baena-Nogueras, A. Warry, C. A. Ortori, H. Todman, C. J. Gray-Hammerton, A. C. W. Pritchard, E. Iles, R. Cook, R. D. Emes, , D. J. Stekel

This study identifies dairy slurry tanks as critical for antimicrobial resistance (AMR) prevalence and control, showing that 60 days of storage can reduce ARB spread by >99%.

bioRxiv · Feb 22, 2022Microbiology

Mechanical strain stimulates COPII-dependent trafficking via Rac1

H. Farhan, S. Phuyal, P. Roca-Cusachs, S. Geley, V. Reiterer, D. Teis, D. Fankhauser, J. Kahlhofer, A.-L. Le Roux, M. Baker, M. Kazanietz, L. A. Eriksson, S. J. Mahdizadeh, E. Djaerff

The paper shows mechanical strain regulates COPII-dependent ER-export through Rac1-mediated mechanotransduction.

bioRxiv · Jan 23, 2022 · PreprintCell Biology

In situ structure of the AcrAB-TolC efflux pump at subnanometer resolution

M. Chen, X. Shi, Z. Yu, G. Fan, I. I. Serysheva, M. Baker, B. Luisi, S. Ludtke, Z. Wang

The paper uses cryo-ET to determine the 7 Å structure of the AcrAB-TolC efflux pump in Escherichia coli, revealing its activation mechanism through interprotein interactions.

bioRxiv · Jun 10, 2020Biophysics

The ARRIVE guidelines 2019: updated guidelines for reporting animal research

N. Percie du Sert, V. Hurst, A. Ahluwalia, S. Alam, M. T. Avey, M. Baker, W. J. Browne, A. Clark, I. C. Cuthill, U. Dirnagl, M. Emerson, P. Garner, S. T. Holgate, D. W. Howells, N. A. Karp, , H. Würbel

The paper updates the ARRIVE guidelines for reporting animal research, introducing an Essential 10 checklist and a Recommended Set to improve transparency and reproducibility.

bioRxiv · Jul 15, 2019Scientific Communication & Education

Reporting animal research: Explanation and Elaboration for the ARRIVE guidelines 2019

N. Percie du Sert, A. Ahluwalia, S. Alam, M. T. Avey, M. Baker, W. Browne, A. Clark, I. C. Cuthill, U. Dirnagl, M. Emerson, P. Garner, S. T. Holgate, D. W. Howells, V. Hurst, N. A. Karp, , H. Würbel

This paper explains and elaborates on the revised ARRIVE guidelines for reporting animal research, providing rationale and examples to improve transparency and reproducibility.

bioRxiv · Jul 15, 2019Scientific Communication & Education

Engineering microscale systems for fully autonomous intracellular neural interfaces

S. Sampath Kumar, M. Baker, M. Okandan, J. Muthuswamy

This paper introduces a MEMS-based system for autonomous intracellular neural recordings, demonstrating comparable success rates to conventional methods in Aplysia Californica neurons.

bioRxiv · Jul 2, 2019Bioengineering

Stoichiometric quantification of spatially dense assemblies with qPAINT

M. Baker, D. J. Nieves, G. Hilzenrat, J. F. Berengut, K. Gaus, L. K. Lee

This paper demonstrates that qPAINT measurements remain robust even when target molecules are as close as 3 nm apart, showing no significant cross-reactivity in dense assemblies.

bioRxiv · Jan 21, 2019Biophysics