Author

A. Panda

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Microbiology· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Organism:human· 2 Assay:proteomics· 2 Organism:bacteria (other)· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

C. Brown· 2 shared J. Coleman· 2 shared J. E. Rothman· 2 shared K. Gupta· 2 shared R. McAllister· 2 shared A. Akhtar· 1 shared A. Deshmukh· 1 shared A. J. Welch· 1 shared

Activity by Year

2022-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersBiophysics

C. Brown

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs

C. Brown, S. Ghosh, R. McAllister, M. Kumar, G. Walker, E. Sun, T. Aman, A. Panda, S. Kumar, W. V. Li, J. Coleman, Y. Liu, J. E. Rothman, M. Bhattacharyya, K. Gupta

This paper introduces a platform for high-throughput extraction of membrane proteins into native nanodiscs while preserving their local membrane context and provides a database for optimized extraction conditions.

bioRxiv · Feb 10, 2024Biophysics

Direct determination of oligomeric organization of integral membrane proteins and lipids from intact customizable bilayer

A. Panda, F. Giska, A. L. Duncan, A. J. Welch, C. Brown, R. McAllister, H. Parameswaran, J. N. D. Goder, J. Coleman, S. Ramakrishnan, F. Pincet, L. Guan, S. Krishnakumar, J. E. Rothman, K. Gupta

This paper develops a platform for analyzing integral membrane proteins and lipids in intact membranes using native mass spectrometry, showing how lipid binding and membrane composition affect protein function.

bioRxiv · Mar 12, 2023Biophysics

Characterization of Plasmodium falciparum RAP domain proteins-RAP291 and RAP070, and their association with ribosomal RNAs

A. Akhtar, A. Deshmukh, A. Panda, E. Saini, R. Pandey, I. T. Junaid, N. Onchieku, S. Parveen, S. S. Singh, D. Gupta, M. Theisen, A. Mohmmed, P. Malhotra

This study characterizes two Plasmodium falciparum RAP domain proteins, showing they bind ribosomal RNAs and associate with the MSP-1 complex, and inhibit merozoite invasion.

bioRxiv · Sep 21, 2022 · PreprintMicrobiology

Effectors enabling adaptation to mitochondrial complex I loss in Hurthle cell carcinoma

R. K. Gopal, V. R. Vantaku, A. Panda, B. Reimer, S. Rath, T.-L. To, A. S. Fisch, M. Cetinbas, M. Livneh, M. J. Calcaterra, B. Gigliotti, K. Pierce, C. B. Clish, D. Dias-Santagata, P. M. Sadow, , V. Mootha

This study identifies molecular effectors in Hurthle cell carcinoma linked to mitochondrial complex I loss, highlighting lipid peroxide scavenging as a therapeutic vulnerability.

bioRxiv · Aug 16, 2022Cancer Biology

Bacterial outer-membrane polysaccharide export (OPX) proteins occupy three structural classes with selective β-barrel porin requirements for polymer secretion

F. Saïdi, U. Mahanta, A. Panda, N. Y. Jolivet, R. Bitazar, G. John, M. Martinez, A. Mellouk, C. Calmettes, Y.-W. Chang, G. Sharma, S. T. Islam

The paper identifies three structural classes of bacterial OPX proteins and shows that some use β-barrel porins for polysaccharide secretion when they cannot span the outer membrane.

bioRxiv · Feb 11, 2022Microbiology