Author

C.-C. Hsu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 6 Plant Biology· 3 Bioengineering· 1 Cell Biology· 1 Microbiology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 11 Assay:proteomics· 10 Research Focus:cell type annotation· 9 Organism:human· 6 Assay:metabolomics· 4 Organism:Arabidopsis· 3 Research Focus:cell signaling & trafficking· 3 Research Focus:differential expression· 3

Frequent Co-Authors

C.-F. Tsai· 2 shared C.-W. Chen· 2 shared M.-H. Lin· 2 shared P.-R. Su· 2 shared S.-Y. Lin· 2 shared A. Adami· 1 shared A. Sen· 1 shared A. Tao· 1 shared

Activity by Year

2019-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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2 shared papersBiochemistry

C.-F. Tsai

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13 papers

Recent·Most cited

TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomics

C.-W. Chen, P.-Y. Lin, Y.-M. Lai, M.-H. Lin, S.-Y. Lin, C.-C. Hsu

TIMAHAC enables high-throughput simultaneous analysis of plant phosphoproteomics and N-glycoproteomics, identifying 1,954 N-glycopeptides and 11,255 phosphopeptides in Arabidopsis under ABA treatment.

bioRxiv · Feb 26, 2024Biochemistry

The Non-Phototrophic Hypocotyl3 (NPH3)-domain protein NRL5 is a trafficking-associated GTPase essential for drought resistance.

N. UPADHYAY-TIWARI, X.-J. Huang, Y.-C. Lee, S. K. Singh, C.-C. Hsu, S.-S. Huang, P. E. Verslues

The paper identifies NRL5, an NPH3-domain protein with GTPase activity, as essential for drought resistance by regulating proline catabolism and trafficking interactions.

bioRxiv · May 10, 2023 · PreprintPlant Biology

High-throughput Automated Muropeptide Analysis (HAMA) Reveals Peptidoglycan Composition of Gut Microbial Cell Walls

Y.-C. Hsu, P.-R. Su, L.-J. Huang, K.-Y. Cheng, C.-h. Chen, C.-C. Hsu

The paper introduces HAMA, a high-throughput automated muropeptide analysis platform that identifies and quantifies muropeptide structures in bacterial peptidoglycan, revealing structural variations and correlations with cell stiffness.

bioRxiv · Apr 17, 2023 · PreprintBiochemistry

A Suspension Trapping-Based Sample Preparation Workflow for Sensitive Plant Phosphoproteomics

C.-W. Chen, C.-F. Tsai, M.-H. Lin, S.-Y. Lin, C.-C. Hsu

The paper develops a tandem S-Trap-IMAC method for plant phosphoproteomics, improving coverage and quantification accuracy in Arabidopsis.

bioRxiv · Feb 23, 2023 · PreprintBiochemistry

A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics

C.-F. Tsai, Y.-T. Wang, C.-C. Hsu, R. B. Kitata, R. K. Chu, M. Velickovic, R. Zhao, S. M. Williams, W. B. Chrisler, M. L. Jorgensen, R. J. Moore, Y. Zhu, K. D. Rodland, R. D. Smith, C. H. Wasserfall, , T. Liu

This paper introduces a streamlined phosphoproteomics workflow that reduces sample loss and processing time, enabling sensitive detection of phosphopeptides from nanoscale samples.

bioRxiv · Apr 12, 2022Biochemistry

Functional single cell proteomic profiling of cells with abnormal DNA damage response dynamics

P.-R. Su, L. You, C. Beerens, K. Bezstarosti, J. Demmers, M. Pabst, R. Kanaar, C.-C. Hsu, M.-P. Chien

The paper develops FUNpro, a functional single-cell proteomic profiling method, to link proteomes with dynamic cellular phenotypes, identifying PDS5A and PGAM5 in DDR survival.

bioRxiv · Oct 13, 2021 · PreprintBioengineering

Dietary Exposure to Antibiotic Residues Facilitates Metabolic Disorder by Altering the Gut Microbiota and Bile Acid Composition

R.-A. Chen, W.-K. Wu, S. Panyod, P.-Y. Liu, H.-L. Chuang, Y.-H. Chen, Q. Lyu, H.-C. Hsu, T.-L. Lin, T.-C. D. Shen, Y.-T. Yang, H.-B. Zou, H.-S. Huang, Y.-E. Lin, C.-C. Chen, , L.-Y. Sheen

This study shows that low-dose antibiotic residue exposure in early life alters gut microbiota and bile acid composition, leading to long-term metabolic disorders in mice.

bioRxiv · Jul 6, 2021Microbiology

A cell type-specific multiomics uncovers a guard cell-specific RAF15-SnRK2.6/OST1 kinase cascade

H. Wang, Y. Wang, R. Li, W. Ren, T. Sang, B. Zhao, X. Wang, X. Zhang, S. Dai, C.-C. Hsu, C.-P. Song, P. Wang

The paper develops a cell type-specific multiomics pipeline to analyze guard cells and mesophyll cells, revealing a kinase cascade involved in ABA-induced stomatal closure.

bioRxiv · Jul 6, 2021Plant Biology

Evaluating the Anti-aging Effects of Chinese Herbal Medicine Rhodiola rosea L. in Cultured Keratinocytes

W. H. Toh, J. C. Clapper, C.-C. Hsu, C.-B. Chen, H.-e. Lee, W.-H. Chung

This study evaluates the anti-aging effects of Rhodiola rosea L. extracts on UV-induced photoaging in keratinocytes by analyzing telomerase activity and DNA damage markers.

bioRxiv · Apr 26, 2021 · PreprintBiochemistry

Ubiquitination and Phosphorylation are Independently Required for Epsin-Mediated Internalization of Cargo in S. cerevisiae

A. Sen, W.-C. Hsieh, C. B. Hanna, C.-C. Hsu, M. Pearson, A. Tao, R. C. Aguilar

This study shows that ubiquitination and phosphorylation independently regulate epsin-mediated internalization of the yeast Na+ pump Ena1.

bioRxiv · Feb 7, 2020 · PreprintCell Biology

Relationship between maximal incremental and high-intensity interval exercise performance in elite athletes

S.-C. Chang, A. Adami, H.-C. Lin, Y.-C. Lin, C. P. C. Chen, T.-C. Fu, C.-C. Hsu, S.-C. Huang

This study examines factors determining high-intensity interval training (HIIT) performance in athletes, finding that Blim is influenced by oxygen consumption, heart rate, and muscle oxygenation recovery rather than maximal VO2.

bioRxiv · Nov 26, 2019Physiology

Deep Lipidomics and Molecular Imaging of Unsaturated Lipid Isomers: A Universal Strategy Initiated by mCPBA Epoxidation

T.-H. Kuo, H.-H. Chung, H.-Y. Chang, M.-Y. Wang, T.-L. Shen, C.-C. Hsu

This paper introduces MELDI, a method to identify and map lipid isomers using epoxidation and mass spectrometry, demonstrating its application in human serum and adipocytes.

bioRxiv · Jun 2, 2019Biochemistry

Application of TurboID-mediated proximity labeling for mapping a GSK3 kinase signaling network in Arabidopsis

T.-W. Kim, C. H. Park, C.-C. Hsu, J.-Y. Zhu, Y. Hsiao, T. Branon, S.-L. Xu, A. Y. Ting, Z.-Y. Wang

This study uses TurboID-mediated proximity labeling to map the GSK3 kinase signaling network in Arabidopsis, identifying hundreds of BIN2-interacting proteins.

bioRxiv · May 13, 2019Plant Biology