Author
M. Kim
Boston Children's HospitalPrimary ORCID profile (0009-0003-7647-5387 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Same name, identified by ORCID
Biology Disciplines
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2019-2026 · peak 21/yrCo-Author Collaboration Network
10 top collaborators · 3 mutual co-author links87 papers
Recent·Most cited
- BioengineeringbioRxivPreprint
Non-Covalently Associated Streptavidin Multi-Arm Nanohubs Exhibit Mechanical and Thermal Stability in Protein-Network Materials
D. S. Knoff, S. Y. Kim, K. A. Fajardo Cortes…·M. Kim
This study characterizes non-covalently associated streptavidin nanohubs as stable protein-network materials with properties similar to chemically bonded hydrogels.
DOI 10.1101/2022.05.09.491252 - Cancer BiologybioRxivPreprint
CPSF3 inhibition blocks pancreatic cancer cell proliferation through disruption of core histone processing
A. A. Alahmari, A. H. Chaubey, A. A. Tisdale…·M. E. Feigin
This study identifies CPSF3 as a druggable target in pancreatic cancer by showing its inhibition disrupts histone processing and cell proliferation.
DOI 10.1101/2022.05.09.491230 - BiophysicsbioRxiv
Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack
S. Yang, G. Hiotis, Y. Wang…·T. Walz
The paper investigates HIV-1 spike protein dynamics using cryo-EM and simulations, showing how tilting exposes the MPER to antibody attack and alters membrane fusion.
- Cancer BiologybioRxivPreprint
Molecular Characterization of the Tumor Microenvironment in Renal Medullary Carcinoma
D. S. Tourigny, M. Zucker, M. Kim…·E. Reznik
This study characterizes the tumor microenvironment of renal medullary carcinoma using genomic, metabolic, and single-cell RNA-sequencing data, identifying key molecular features and potential therapeutic targets.
- MicrobiologybioRxivPreprint
Gut microbiota analysis of the western honeybee (Apis mellifera L.) infested with the mite Varroa destructor reveals altered bacterial and archaeal community
This study analyzes the gut microbiota of western honeybees infected with Varroa destructor, finding altered bacterial and archaeal communities in larvae and adult bees.
DOI 10.1101/2022.04.20.488909 - BioengineeringbioRxiv
Engineering Antioxidant and Oxygen-Releasing Lignin Composites to Promote Wound Healing
S. Balaji, W. D. Short, B. W. Padon…·J. P. Jung
This study develops lignin composites with oxygen-releasing nanoparticles to enhance wound healing through antioxidation and controlled oxygen delivery, showing improved tissue granulation and collagen remodeling.
DOI 10.1021/acsami.2c22982 - MicrobiologybioRxiv
A consensus protocol for the recovery of mercury methylation genes from metagenomes
E. Capo, B. D. Peterson, M. Kim…·C. M. Gionfriddo
The paper presents a standardized protocol and bioinformatic pipeline for detecting and quantifying mercury methylation genes (hgcAB) in metagenomes, showing comparable efficiency between single and co-assembly approaches.
DOI 10.1111/1755-0998.13687 - BiochemistrybioRxiv
Two Interaction Surfaces between XPA and RPA Organize the Preincision Complex in Nucleotide Excision Repair
M. Kim, H. S. Kim, A. D'Souza…·O. D. Scharer
The paper investigates two interaction surfaces between XPA and RPA in the preincision complex of nucleotide excision repair, showing their distinct roles in complex assembly and NER activity.
DOI 10.1073/pnas.2207408119 - BiochemistrybioRxivPreprint
Active site structure of the Shigella flexneri effector OspI
A. Nishide, K. Takagi, M. Kim, T. Mizushima
The paper determines the crystal structure of a C62S mutant of OspI, revealing its active site conformation and mechanism of deamidating Ubc13.
DOI 10.1101/2022.02.15.480433 - BiochemistrybioRxivPreprint
Dopamine ameliorates hyperglycemic memory-induced vascular dysfunction in diabetic retinopathy
Y.-J. Lee, H.-Y. Jeon, A.-J. Lee…·K.-S. Ha
This study shows dopamine reduces HGM-induced retinal vascular dysfunction by mitigating oxidative stress and mitochondrial damage in diabetic retinopathy.
DOI 10.1101/2022.01.19.476943 - BiophysicsbioRxiv
Multi-Wavelength Analytical Ultracentrifugation of Biopolymer Mixtures and Interactions
A. Henrickson, G. E. Gorbet, A. Savelyev…·B. Demeler
The paper demonstrates the utility of multi-wavelength analytical ultracentrifugation for analyzing complex biopolymer mixtures and interactions.
DOI 10.1016/j.ab.2022.114728 - Cell BiologybioRxivPreprint
Protein homeostasis is maintained by proteasomes containing PSMB9 induced by EEF1A2 upon mitochondrial stress
M. Kim, L. Samluk, T. M. Stepkowski…·A. Chacinska
The paper shows that mitochondrial stress increases proteasome activity via HSPB1 and PSMB9, which are regulated by EEF1A2 and localized near mitochondria to prevent protein aggregation.
DOI 10.1101/2021.12.23.473808 - BiochemistrybioRxiv
High-throughput UHPLC-MS to screen metabolites in feces for gut metabolic health
A. d. Zawadzki, M. Thiele, T. Suvitaival…·C. Legido-Quigley
This study develops a high-throughput UHPLC-MS method to screen fecal metabolites for gut metabolic health, identifying 28 metabolites with quantitative profiles in patients with alcohol-related liver disease and healthy controls.
DOI 10.3390/metabo12030211 - NeuroscienceNeuroImagePeer-reviewed
Using diffusion MRI data acquired with ultra-high gradients to improve tractography in routine-quality data
Chiara Maffei, Cliff Lee, M. Planich…·Anastasia Yendiki
This study improves automated white-matter tractography in lower-quality diffusion MRI data by training on high-quality Connectom data and manually annotated pathways.
- BiophysicsbioRxiv
Differential ion dehydration energetics explains selectivity in the non-canonical lysosomal K+ channel TMEM175
S. Oh, F. Marinelli, W. Zhou…·R. K. Hite
The paper investigates the ion selectivity mechanism of TMEM175, showing that its unique hydrophobic constriction and electrostatic field enable K+ selectivity without a canonical filter.
DOI 10.7554/elife.75122 - Plant BiologyMolecular PlantPeer-reviewed
Direct acetylation of the conserved threonine of an immune regulator by bacterial effectors activates RPM1-dependent immunity in Arabidopsis
S. Choi, M. Prokchorchik, H. Lee…·K. H. Sohn
This study shows that bacterial acetyltransferase effectors directly acetylate RIN4 T166, activating RPM1-dependent immunity in Arabidopsis, and that SOBER1 suppresses this by deacetylating the same residue.
DOI 10.1016/j.molp.2021.07.017 - Plant BiologybioRxivPreprint
A temperature sensitive mutation in the CstF77 subunit of the polyadenylation complex reveals the critical function of mRNA 3' end formation for a robust heat stress response in plants
M. Kim, J. D. Swenson, F. McLoughlin, E. Vierling
This study identifies a temperature-sensitive mutation in CstF77 that impairs mRNA 3' end formation, reducing heat stress sensitivity in plants by limiting toxic HSP101 protein accumulation.
DOI 10.1101/2021.10.31.466691 - ImmunologybioRxivPreprint
Mechanically active integrins direct cytotoxic secretion at the immune synapse
M. S. Wang, Y. Hu, E. Sanchez…·M. Huse
This study identifies integrin mechanotransduction as essential for directing cytotoxic secretion at the immune synapse, showing that mechanical forces from LFA-1 guide lytic granule fusion and cytotoxicity.
- Cell BiologybioRxiv
Distinct proteostasis states drive pharmacologic chaperone susceptibility for Cystic Fibrosis Transmembrane Conductance Regulator misfolding mutants
E. F. McDonald, C. M. P. Sabusap, M. Kim, L. Plate
The paper investigates why different CFTR mutations respond variably to the pharmacological chaperone VX-809 by analyzing proteostasis interactions and degradation pathways.
DOI 10.1091/mbc.e21-11-0578 - ImmunologybioRxiv
CD49a Identifies Polyfunctional Memory CD8 T cell Subsets that Persist in the Lungs after Influenza Infection
E. C. Reilly, M. Sportiello, K. Lambert Emo…·D. J. Topham
This study identifies CD49a-expressing polyfunctional CD8 memory subsets in lung tissue that persist after influenza infection and exhibit diverse effector functions.
DOI 10.3389/fimmu.2021.728669 - MicrobiologybioRxivPreprint
The in vitro and in vivo potency of CT-P59 against Delta and its associated variants of SARS-CoV-2
D.-K. Ryu, H.-M. Woo, B. Kang…·S.-Y. Lee
This study evaluates CT-P59's antiviral activity against Delta and its variants, showing reduced in vitro potency but effective in vivo neutralization and symptom remission in mice.
DOI 10.1101/2021.07.23.453472 - Cell BiologybioRxiv
Induction of human trophoblast stem-like cells from primed pluripotent stem cells
Y. J. Jang, M. Kim, B.-K. Lee, J. Kim
This study converts human primed pluripotent stem cells into trophoblast stem-like cells using BMP4 treatment, showing they resemble genuine trophoblast stem cells in morphology, gene expression, and differentiation potential.
DOI 10.1073/pnas.2115709119 - MicrobiologybioRxivPreprint
Metagenome-based comparisons of decay rates and host-specificity of fecal microbial communities for improved microbial source tracking
B. Suttner, B. G. Lindner, M. Kim…·K. T. Konstantinidis
This study tracks cow, pig, and human fecal pollution in lake water over time using metagenomics and benchmarks novel protocols against standard culture-based and qPCR tests for water quality monitoring.
- BiophysicsbioRxiv
Lipid Bilayer Induces Contraction of the Denatured State Ensemble of a Helical-Bundle Membrane Protein
K. Gaffney, R. Guo, M. D. Bridges…·H. Hong
This study investigates the conformation and dynamics of the denatured state ensemble (DSE) of a membrane protein in a native lipid bilayer, finding it is dynamic and partially expanded.
DOI 10.1073/pnas.2109169119 - MicrobiologybioRxiv
Transcriptomic and rRNA:rDNA signatures of environmental vs. enteric Enterococcus faecalis isolates under oligotrophic freshwater conditions
B. Suttner, M. Kim, E. R. Johnston…·K. T. Konstantinidis
This study compares survival strategies of environmental and enteric E. faecalis isolates under freshwater conditions, finding similar decay rates but distinct rRNA:rDNA ratios and limited evidence of habitat adaptation.
DOI 10.1128/spectrum.00817-21 - MicrobiologybioRxiv
Therapeutic effect of CT-P59 against SARS-CoV-2 South African variant
S.-Y. Lee, D.-K. Ryu, Y. K. Choi…·K.-S. Kwon
This study evaluates CT-P59's efficacy against SARS-CoV-2 variants, showing reduced in vitro neutralization but effective in vivo therapeutic potential against the B.1.351 variant.
DOI 10.1016/j.bbrc.2021.06.016 - Evolutionary BiologybioRxivPreprint
Novel insights into joint estimations of demography, mutation rate, and selection using UV sex chromosomes
S. B. Carey, J. H. Peniston, A. C. Payton…·S. F. McDaniel
This study examines how anisogamy influences genetic variation in moss using UV sex chromosomes, finding sex-biased mutation and selection but no model explaining observed diversity ratios.
DOI 10.1101/2021.03.30.437085 - BiophysicsbioRxiv
Quantitative blood flow estimation in vivo by optical speckle image velocimetry
M. M. Qureshi, Y. Liu, K. D. Mac…·E. Chung
This paper introduces OSIV, a technique for quantitative blood flow vector mapping in vivo, demonstrating its ability to measure absolute flow velocity and direction without tracers or high-speed cameras.