Author
S. H. Lee
University of California San DiegoPrimary ORCID profile (0009-0007-4907-0033 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints
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Same name, identified by ORCID
Biology Disciplines
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2017-2024 · peak 7/yrCo-Author Collaboration Network
10 top collaborators · 22 mutual co-author links27 papers
Recent·Most cited
- Cancer BiologybioRxivPreprint
Spatial dissection of cellular heterogeneity and functional crosstalk in the tumor microenvironments of gastric cancers
T. Kim, S. H. Lee, D. Lee…·H. Hur
This study uses spatial transcriptomics to analyze gastric cancer tumor microenvironments, identifying subtypes and functional interactions between cell types that correlate with clinical outcomes.
DOI 10.1101/2023.12.24.573275 - EcologybioRxivPreprint
Genome-wide exploration of metabolic-based pyrethroid resistance mechanism in Helicoverpa armigera
J. Kim, M.-M. Rahman, C. Han…·C. Omoto
This study identifies CYP3 subfamily gene variants and differential expression of detoxification enzymes as key factors in deltamethrin resistance in Helicoverpa armigera, rather than target site mutations.
DOI 10.1101/2023.12.18.572109 - BiophysicsbioRxivPreprint
The role of positively charged small biomolecules in the aggregation of hyperphosphorylated tau in Alzheimer's disease
J. Lee, K. Lee, M. S. Kim…·S. H. Lee
This study identifies electrostatic interactions between hyperphosphorylated tau and polyamines as crucial for tau aggregation in Alzheimer's disease and observes the transition from aggregates to fibrils.
DOI 10.1101/2023.10.19.563032 - MicrobiologybioRxivPreprint
Genetic and transcriptomic analysis of hyphal constriction based on a novel assay method in the rice blast fungus
E. Cho, S. H. Lee, M. Jeong…·J. Jeon
The paper introduces an in vitro assay to study hyphal constriction in Magnaporthe oryzae, identifying transcriptional changes and a potential histone modification role in this process.
DOI 10.1101/2023.06.14.545034 - BioengineeringbioRxivPreprint
Balance-directed protein engineering of IsPETase enhances both PET hydrolysis activity and thermostability
S. H. Lee, H. Seo, H. Hong…·K.-J. Kim
This study engineers IsPETase to balance PET hydrolysis activity and thermostability, resulting in a variant that outperforms existing variants in depolymerization efficiency.
DOI 10.1101/2022.11.14.516528 - MicrobiologybioRxivPreprint
Discovery and biosynthesis of imidazolium antibiotics from a probiotic Bacillus licheniformis
S. L. Ham, T. H. Lee, K. J. Kim…·C. S. Kim
The paper identifies a novel imidazolium antibiotic from Bacillus licheniformis and proposes its biosynthetic pathway through various experimental methods.
DOI 10.1101/2022.10.05.511033 - Cell BiologybioRxivPreprint
Epidermis derived lactate promotes sterile inflammation by inducing metabolic rewiring in macrophages.
U. Ayyangar, A. Karkhanis, H. Tay…·S. Raghavan
The paper shows that epidermis-derived lactate promotes sterile inflammation by inducing metabolic changes in macrophages that support their effector functions.
DOI 10.1101/2022.07.29.501937 - Pharmacology & ToxicologybioRxivPreprint
Complement receptor C5aR1 signaling in sensory neuron-associated macrophages drives neuropathic pain
A. U. Quadros, A. G. d. M. Maganin, E. A. Silva…·T. M. Cunha
This study identifies C5aR1 signaling in sensory neuron-associated macrophages as a driver of neuropathic pain and shows it can be inhibited to reduce pain.
DOI 10.1101/2022.07.01.498487 - BioengineeringbioRxivPreprint
Laser particle barcoding for multi-pass high-dimensional flow cytometry
S. J. Kwok, S. Forward, M. D. Fahlberg…·S. H. Yun
This paper introduces multi-pass flow cytometry using laser particle barcoding to enable high-dimensional single-cell analysis with reduced spectral overlap and simplified panel design.
DOI 10.1101/2022.06.03.494697 - Cell BiologybioRxiv
Molecular mechanics underlying flat-to-round membrane budding in live secretory cells
W. Shin, B. Zucker, N. Kundu…·L.-G. Wu
The paper identifies actin filaments and dynamin as key forces mediating non-coated membrane budding in live cells, revealing mechanisms that transform flat membranes into vesicles.
DOI 10.1038/s41467-022-31286-4 - Cell BiologybioRxiv
EFHD1 ablation reduces cardiac mitoflash activation and protects cardiomyocytes from ischemia.
D. R. Eberhardt, S. H. Lee, X. Yin…·D. Chaudhuri
This study shows that EFHD1 deletion reduces mitochondrial Ca2+ overload and ROS production, protecting cardiomyocytes from ischemia-induced injury.
DOI 10.1016/j.yjmcc.2022.03.002 - BiochemistrybioRxiv
Highly specific chimeric DNA-RNA guided genome editing with enhanced CRISPR-Cas12a system
H. Kim, W.-j. Lee, C. H. Kim…·S. H. Lee
The paper enhances CRISPR-Cas12a system specificity and efficiency using a chimeric DNA-RNA guide, achieving 7.41 and 7.60 times improvements respectively.
DOI 10.1016/j.omtn.2022.03.021 - Cell BiologybioRxivPreprint
Yap/Taz-Activated Tert-Expressing Acinar Cells Are Required for Pancreatic Regeneration
H. N. Suh, M. J. Kim, S. H. Lee…·J.-I. Park
This study identifies Tert+ acinar cells as critical for pancreatic regeneration, showing their activation by Yap/Taz and their role in tissue repair.
DOI 10.1101/2021.08.30.458292 - BioengineeringbioRxiv
Immersive virtual prism adaptation therapy with depth sensing camera: A feasibility study with functional near infrared spectroscopy in healthy adults
S. Cho, W.-S. Kim, J. Park…·N.-J. Paik
This study tests virtual prism adaptation therapy using a depth-sensing camera and fNIRS in healthy adults to assess behavioral and cortical changes during adaptation phases.
- MicrobiologybioRxivPreprint
High Content and High Throughout Phenotypic Assay for the Hourly Resolution of the Malaria Parasite Erythrocytic Cycle
D. Bell, S. Ridewood, A. P. Patel…·E. Deu
This paper introduces a high-content, high-throughput phenotypic assay for studying the erythrocytic cycle of malaria parasites with hourly resolution.
DOI 10.1101/2021.03.15.434938 - Cancer BiologybioRxiv
Sex differences in bile acid homeostasis and excretion underlie the disparity in liver cancer incidence between males and females.
M. E. Patton, S. Kelekar, L. J. Taylor…·S. Anakk
This study identifies sex-specific bile acid metabolism differences that protect female livers from liver cancer and suggests targeting bile acid excretion as a therapeutic strategy.
DOI 10.7554/elife.96783.4 - ImmunologybioRxiv
The role of dermis resident macrophages and their interaction with neutrophils in the early establishment of Leishmania major infection transmitted by sand fly bite
M. M. Chaves, S. H. Lee, O. Kamenyeva…·D. Sacks
This study investigates how dermis resident macrophages and neutrophils interact during early Leishmania major infection transmitted by sand fly bite, revealing the role of phagocytosis and receptor tyrosine kinases in infection outcomes.
DOI 10.1371/journal.ppat.1008674 - EcologybioRxivPreprint
Core-periphery structure in mutualistic networks: an epitaph for nestedness?
A. M. Martin Gonzalez, D. P. Vazquez, R. Ramos-Jiliberto…·V. Miele
The paper reviews 419 studies on mutualistic networks and argues that core-periphery structure is more relevant than nestedness for describing ecological network topology, providing code for its calculation in R.
DOI 10.1101/2020.04.02.021691 - Pharmacology & ToxicologybioRxivPreprint
Protective effect of agmatine against cisplatin-induced apoptosis in an auditory cell line
E. Park, S. H. Lee, H. Lee…·G. J. Im
This study evaluates agmatine's protective effect against cisplatin-induced apoptosis in HEI-OC1 auditory cells, showing reduced BAX and caspase-3 activity.
DOI 10.1101/2020.03.24.005314 - BiochemistrybioRxiv
Enhancement of Target Specificity of CRISPR-Cas12a by Using a Chimeric DNA-RNA Guide
H. Kim, W.-j. Lee, S.-H. Kang…·S. H. Lee
This study enhances CRISPR-Cas12a specificity by using a chimeric DNA-RNA guide, reducing off-target mutations in genome editing.
DOI 10.1093/nar/gkaa605 - Cancer BiologybioRxiv
Feasibility of real-time in vivo 89Zr-DFO-labeled CAR T-cell trafficking using PET imaging
S. H. Lee, H. Soh, J. H. Chung…·J.-S. Ryu
This paper demonstrates the feasibility of using PET imaging to track 89Zr-DFO-labeled CAR T-cells in vivo, showing their distribution and migration over time.
- MicrobiologybioRxiv
Dual activity of PNGM-1, a metallo-β-lactamase and tRNase Z, pinpoints the evolutionary origin of subclass B3 metallo-β-lactamases
J. H. Lee, M. Takahashi, J. H. Jeon…·S. H. Lee
This paper identifies PNGM-1, a dual-activity enzyme with metallo-β-lactamase and tRNase Z functions, and shows it evolved from tRNase Z, providing insights into the origin of subclass B3 metallo-β-lactamases.
DOI 10.1080/22221751.2019.1692638 - MicrobiologybioRxiv
Metagenomic 16S rRNA gene sequencing survey of Borrelia species in Irish samples of Ixodes ricinus ticks
J. S. Lambert, M. J. Cook, J. E. Healy…·S. H. Lee
The paper surveys Borrelia species in Irish Ixodes ricinus ticks using 16S rRNA gene sequencing to identify infection rates and species diversity.
DOI 10.1371/journal.pone.0209881 - BiophysicsbioRxiv
CRISPR Cas9 searches for a protospacer adjacent motif by one-dimensional diffusion
V. Globyte, S. H. Lee, T. Bae…·C. Joo
This study uses smFRET to show Cas9 searches for PAM sequences via one-dimensional diffusion, competing with 3D diffusion for efficient target binding.
DOI 10.15252/embj.201899466 - Cancer BiologybioRxiv
TumorFusions: an integrative resource for reporting cancer-associated transcript fusions in 33 tumor types
X. Hu, Q. Wang, F. P. Barthel…·R. Verhaak
The paper reports cancer-associated transcript fusions in 33 tumor types using TCGA data and provides a resource for accessing the results.
DOI 10.1093/nar/gkx1018