Author
J. L. Rubinstein
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2024 · peak 9/yrCo-Author Collaboration Network
10 top collaborators · 20 mutual co-author links36 papers
Recent·Most cited
Vesicle Picker: A tool for efficient identification of membrane protein complexes in vesicles
R. Karimi, C. E. Coupland, J. L. Rubinstein
Vesicle Picker automatically identifies vesicles and selects particle locations in cryo-EM micrographs, improving efficiency for membrane protein complex analysis.
bioRxiv · Jul 15, 2024Biophysics
High resolution cryo-EM of V-ATPase in native synaptic vesicles
C. E. Coupland, R. Karimi, S. A. Bueler, Y. Liang, G. M. Courbon, J. M. Di Trani, C. J. Wong, R. Saghian, J.-Y. Youn, L.-Y. Wang, J. L. Rubinstein
The paper determines the high-resolution structure of V-ATPase in native synaptic vesicles using cryo-EM, revealing interactions with cholesterol and synaptophysin.
bioRxiv · Apr 1, 2024Biochemistry
Structure and dynamics of a pentameric KCTD5/Cullin3/Gβγ E3 ubiquitin ligase complex
D. M. Nguyen, D. H. Rath, D. Devost, D. Petrain, R. Rizk, A. X. Ji, N. Narayanan, D. Yong, A. Zhai, D. A. Kuntz, M. U. Q. Mian, N. C. Pomroy, A. F. A. Keszei, S. Benlekbir, M. T. Mazhab-Jafari, , G. G. Prive
The paper presents the cryo-EM structure of a pentameric KCTD5/CUL3/Gβγ E3 ubiquitin ligase complex, revealing its dynamic architecture and mechanism for ubiquitylating Gβγ.
bioRxiv · Sep 20, 2023 · PreprintBiochemistry
A simple assay for inhibitors of mycobacterial oxidative phosphorylation
S. A. Harden, G. M. Courbon, Y. Liang, J. L. Rubinstein
This paper introduces a fluorescence-based assay to detect and distinguish inhibitors of mycobacterial oxidative phosphorylation, showing its utility for identifying new inhibitors.
bioRxiv · Aug 8, 2023Biochemistry
Structural basis for inhibition of mycobacterial ATP synthase by squaramides and second generation diarylquinolines
G. M. Courbon, P. R. Palme, L. Mann, A. Richter, P. Imming, J. L. Rubinstein
This study investigates how squaramides and diarylquinolines inhibit mycobacterial ATP synthase, revealing structural insights and differences in their mechanisms and effects.
bioRxiv · Feb 3, 2023Biochemistry
Antibody avidity and multi-specificity combined to confer protection against SARS-CoV-2 and resilience against viral escape
C. Burn Aschner, K. Muthuraman, I. Kucharska, H. Cui, K. Prieto, M. S. Nair, M. Wang, Y. Huang, N. Christie-Holmes, B. Poon, J. Lam, A. Sultana, R. Kozak, S. Mubareka, J. L. Rubinstein, , J.-P. Julien
This study develops a multimeric antibody platform (Multabody) that enhances neutralization potency and breadth against SARS-CoV-2 and its variants through avidity and multi-specificity.
bioRxiv · Oct 23, 2022 · PreprintImmunology
Structural basis of V-ATPase VO region assembly by Vma12p, 21p, and 22p
H. Wang, S. A. Bueler, J. L. Rubinstein
This study reveals how Vma12p, Vma21p, and Vma22p assemble and regulate V-ATPase VO region to prevent premature V1 binding and ensure proper acidification of cellular compartments.
bioRxiv · Oct 19, 2022Biochemistry
Structure of mycobacterial respiratory Complex I
Y. Liang, A. Plourde, S. A. Bueler, J. Liu, P. Brzezinski, S. Vahidi, J. L. Rubinstein
The paper determines the structure of mycobacterial Complex I using cryoEM, revealing its composition and interactions with menaquinone and a unique lipid.
bioRxiv · Oct 4, 2022Biochemistry
Structure of V-ATPase from citrus fruit
Y. Z. Tan, K. A. Keon, R. Abdelaziz, P. Imming, W. Schulze, K. Schumacher, J. L. Rubinstein
This study determines the structure of plant V-ATPase from citrus fruit using SidK purification, revealing its ATP:H+ ratio and structural differences from yeast and mammalian enzymes.
bioRxiv · May 1, 2022Biochemistry
Structural basis of mammalian Complex IV inhibition by steroids
J. Di Trani, A. Moe, D. Riepl, P. Saura, V. R. I. Kaila, P. Brzezinski, J. L. Rubinstein
This study identifies a steroid-binding site on Complex IV and shows how steroid binding inhibits proton uptake through the K-pathway.
bioRxiv · Apr 13, 2022Biophysics
Structure of ATP synthase under strain during catalysis
The paper uses cryoEM to study yeast mitochondrial ATP synthase under strain during ATP-hydrolysis-driven rotation, revealing structural deformation of the peripheral stalk and its role in opposing bending forces.
bioRxiv · Jan 24, 2022Biophysics
Detection and quantification of the vacuolar H ATPase using the Legionella effector protein SidK
M. Maxson, Y. M. Abbas, J. Z. Wu, S. Grinstein, J. L. Rubinstein
The paper introduces a new probe derived from SidK to specifically localize and quantify V-ATPases in live and fixed cells, showing their progressive acquisition during phagosome maturation and subdomain distribution.
Journal of Cell Biology · Jan 13, 2022Peer-reviewedCell Biology
Cryo-EM of the yeast VO complex reveals distinct binding sites for macrolide V-ATPase inhibitors
K. A. Keon, S. Benlekbir, S. H. Kirsch, R. Muller, J. L. Rubinstein
The paper determines the structures of the yeast VO complex bound to two macrolide inhibitors, revealing distinct binding sites on the c ring that block proton translocation.
bioRxiv · Nov 15, 2021Biochemistry
Coordinated conformational changes in the V1 complex during V-ATPase reversible dissociation
T. Vasanthakumar, K. A. Keon, S. A. Bueler, M. C. Jaskolka, J. L. Rubinstein
The paper uses cryoEM to study conformational changes in yeast V1 complex during V-ATPase dissociation, revealing how subunit C enables reassembly with VO.
bioRxiv · Nov 9, 2021Biochemistry
CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7
Y. Z. Tan, Y. M. Abbas, J. Z. Wu, D. Wu, G. G. Hesketh, S. A. Bueler, A.-C. Gingras, C. V. Robinson, S. Grinstein, J. L. Rubinstein
The paper uses cryoEM to study endogenous V-ATPase interactions with mEAK-7 in porcine kidney, revealing structural insights and functional differences compared to yeast.
bioRxiv · Nov 3, 2021Biochemistry
Structure of mycobacterial CIII2CIV2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203)
D. J. Yanofsky, J. M. Di Trani, S. Krol, R. Abdelaziz, S. A. Bueler, P. Imming, P. Brzezinski, J. L. Rubinstein
This study determines the structure of the mycobacterial CIII2CIV2 respiratory supercomplex bound to the tuberculosis drug telacebec, revealing its mechanism of inhibiting menaquinol oxidation.
bioRxiv · Jul 6, 2021Biochemistry
The respiratory supercomplex from C. glutamicum
A. Moe, T. Kovalova, S. Krol, D. J. Yanofsky, M. Bott, D. Sjöstrand, J. L. Rubinstein, M. Högbom, P. Brzezinski
This paper determines the structure of the CIII2CIV2 supercomplex from C. glutamicum using cryo-EM, revealing its architecture and proton transport pathway.
bioRxiv · Jun 16, 2021Biochemistry
A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
B. J. Reisman, H. Guo, H. E. Ramsey, M. T. Wright, B. I. Reinfeld, P. B. Ferrell, G. A. Sulikowski, W. K. Rathmell, M. R. Savona, L. Plate, J. L. Rubinstein, B. O. Bachmann
This study identifies the mitochondrial ATP synthase as the target of apoptolidin family glycomacrolides and demonstrates their efficacy in suppressing leukemia progression.
bioRxiv · May 31, 2021Biochemistry
Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III
J. Di Trani, Z. Liu, L. Whitesell, P. Brzezinski, L. Cowen, J. L. Rubinstein
This study uses cryoEM to analyze the structure and dynamics of the Rieske head domain in Candida albicans Complex III and shows how Inz-5 alters its conformational equilibrium.
bioRxiv · May 18, 2021Biochemistry
Structure of Ycf1p reveals the transmembrane domain TMD0 and the regulatory R region of ABCC transporters
S. C. Bickers, S. Benlekbir, J. L. Rubinstein, V. Kanelis
This paper presents the cryo-EM structure of Ycf1p, revealing the TMD0 domain and parts of the R region in ABCC transporters, and shows how their orientation and interactions influence protein function and disease.
bioRxiv · Jan 29, 2021Biochemistry
Polymeric assembly of endogenous Tuberous Sclerosis Protein Complex
D. L. Dai, S. M. N. Hasan, G. Woollard, S. A. Bueler, J.-P. Julien, J. L. Rubinstein, M. T. Mazhab-Jafari
The paper demonstrates that endogenous Tuberous Sclerosis Protein Complex (pTSC) assembles into filamentous super-structures in mammalian brains.
bioRxiv · Jan 18, 2021Biochemistry
Selective Targeting of Ras Mutant Cancers via a New Small Molecule
B. Tolani, A. Celli, Y. Yao, Y. Z. Tan, R. Fetter, C. R. Liem, A. J. de Smith, T. Vasanthakumar, P. Bisignano, I. B. Seiple, J. L. Rubinstein, M. Jost, J. S. Weissman
This paper identifies 249C as a small molecule that selectively targets Ras-mutant cancers by inhibiting V-ATPase, disrupting lysosomal acidification and key survival pathways in Ras-driven tumors.
bioRxiv · Dec 23, 2020Cancer Biology
Cryo-EM structure and kinetics reveal electron transfer by 2D diffusion of cytochrome c in the yeast III-IV respiratory supercomplex
A. Moe, J. Di Trani, J. L. Rubinstein, P. Brzezinski
This paper uses cryo-EM and kinetic studies to show that cytochrome c transfers electrons via 2D diffusion along the surface of yeast III2IV1/2 supercomplexes, enhancing electron transfer efficiency.
bioRxiv · Nov 27, 2020Biochemistry
Through-grid wicking enables high-speed cryoEM specimen preparation
This paper introduces a high-speed cryoEM specimen preparation method that reduces blotting times and improves ice film quality for cryoEM imaging.
Acta Crystallographica Section D Structural Biology · Oct 13, 2020Peer-reviewedBiophysics
Structure of mycobacterial ATP synthase with the TB drug bedaquiline
H. Guo, G. M. Courbon, S. A. Bueler, J. Mai, J. Liu, J. L. Rubinstein
This study determines the structure of mycobacterial ATP synthase with and without bedaquiline, revealing how the drug binds and induces conformational changes to inhibit ATP hydrolysis.
bioRxiv · Aug 6, 2020Biochemistry
Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11
I. Kucharska, E. Thai, A. Srivastava, J. L. Rubinstein, R. Pomes, J.-P. Julien
This study investigates how antibody 3D11 binds to Plasmodium berghei CSP repeats, inducing structural ordering and revealing common mechanisms of antibody evolution against Plasmodium CSP.
bioRxiv · Jun 2, 2020Microbiology
CryoEM map of Pseudomonas aeruginosa PilQ enables structural characterization of TsaP
M. McCallum, S. Tammam, J. L. Rubinstein, L. L. Burrows, P. L. Howell
The paper determines the structure of PilQ from Pseudomonas aeruginosa and identifies TsaP as the spoke-forming component, revealing its role in surface-sensing signal transduction.
bioRxiv · May 29, 2020Microbiology
Electron Event Representation (EER) data enables efficient cryoEM file storage with full preservation of spatial and temporal resolution
H. Guo, E. Franken, Y. Deng, S. Benlekbir, G. Singla Lezcano, B. Janssen, L. Yu, Z. A. Ripstein, Y. Z. Tan, J. L. Rubinstein
The paper introduces EER data format for cryoEM DDD movies, preserving spatial and temporal resolution without increasing file size.
bioRxiv · Apr 28, 2020Biophysics