Author
R. Weber
Primary ORCID profile (0000-0002-6912-3573 · 12 papers)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2019-2023 · peak 4/yrCo-Author Collaboration Network
10 top collaborators · 22 mutual co-author links11 papers
Recent·Most cited
Epigenetic modification and characterization of the MGMT promoter region using CRISPRoff in glioblastoma cells
R. Weber, M. Weller, G. Reifenberger, F. Vasella
This study uses CRISPRoff to introduce site-specific CpG methylation in the MGMT promoter of glioblastoma cells, showing reduced MGMT expression and increased temozolomide sensitivity.
bioRxiv · Sep 21, 2023 · PreprintCancer Biology
The vascular gene Apold1 is dispensable for normal development but controls angiogenesis under pathological conditions
Z. Fan, R. Ardicoglu, A. Batavia, R. Rust, L. von Ziegler, R. Waag, J. Zhang, T. Desgeorges, O. Sturman, H. Dang, R. Weber, A. E. Moor, M. E. Schwab, P.-L. Germain, J. Bohacek, K. De Bock
This study shows that Apold1 is not essential for normal angiogenesis but is critical for revascularization under ischemic conditions and tumor growth.
bioRxiv · Dec 2, 2022 · PreprintCell Biology
In vivo CRISPR screens reveal SCAF1 and USP15 as novel drivers of pancreatic cancer
S. Martinez, R. Weber, T. Woo, A. Malik, M. Geuenich, G. H. Jang, D. Dervovic, K. Al-Zahrani, R. Tsai, N. Fodil, P. Gros, S. S. Sidhu, S. Gallinger, G. Neely, K. Campbell, , D. Schramek
This study uses in vivo CRISPR screens to identify USP15 and SCAF1 as novel tumor suppressors in pancreatic cancer, with potential therapeutic implications.
bioRxiv · Mar 13, 2022Cancer Biology
SLC25A39 is necessary for mitochondrial glutathione import in mammalian cells
Y. Wang, F. S. Yen, X. G. Zhu, R. C. Timson, R. Weber, C. Xing, Y. Liu, B. Allwein, H. Luo, H.-W. Yeh, S. Heissel, G. Unlu, E. R. Gamazon, M. G. Kharas, R. Hite, K. Birsoy
This study identifies SLC25A39 as a mitochondrial glutathione importer and shows its role in cell proliferation and red blood cell development, with GSH availability regulating its abundance.
bioRxiv · Sep 15, 2021Biochemistry
Monitoring the 5`UTR landscape reveals 5`terminal oligopyrimidine (TOP) motif switches to drive translational efficiencies
R. Weber, U. Ghoshdastider, D. Spies, C. Dure, F. Valdivia-Francia, M. Forny, M. Ormiston, P. F. Renz, D. Taborsky, M. Yigit, H. Yamahachi, A. Sendoel
The paper uses long-read sequencing to analyze 5'UTR isoforms in epidermal stem cells and squamous cell carcinomas, showing TOP motif switches affect translational efficiency.
bioRxiv · Jul 2, 2021 · PreprintCancer Biology
The Role of ATP in the RNA Translocation Mechanism of SARS-CoV-2 NSP13 Helicase
This paper models SARS-CoV-2 nsp13 helicase in different substrate states to elucidate its ATP-dependent RNA translocation mechanism using molecular dynamics simulations and structural clustering.
bioRxiv · May 21, 2021Biophysics
Measurement of Volatile Compounds for Real-time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt
J. Kim, A. H. Goldstein, R. Chakraborty, K. J. Jardine, R. Weber, P. O. Sorensen, S. Wang, B. Faybishenko, P. Misztal, E. L. Brodie
This study uses PTR-TOF-MS to analyze microbial volatile compounds during simulated snowmelt, revealing metabolic responses and interactions in soil microbiomes.
bioRxiv · Mar 11, 2021Microbiology
Failure of VITEK2 to reliably detect vanB- mediated vancomycin resistance in Enterococcus faecium
S. V. Walker, M. Wolke, G. Plum, R. Weber, G. Werner, A. G. Hamprecht
This study shows VITEK2 fails to reliably detect vanB-mediated vancomycin resistance in Enterococcus faecium, leading to potential treatment failures.
bioRxiv · Nov 11, 2020Microbiology
Multicenter Analysis of Dosing Protocols for Sotalol Initiation
M. Biswas, A. E. Levy, R. Weber, K. Tarakji, M. Chung, P. A. Noseworthy, C. Newton-Cheh, M. A. Rosenberg
This study analyzes dosing protocols for sotalol initiation in 213 patients, finding that dose adjustment predicts successful initiation, with several clinical factors associated with the need for adjustment.
bioRxiv · Jan 29, 2019Pharmacology & Toxicology
Applications of Machine Learning in Decision Analysis for Dose Management for Dofetilide
A. E. Levy, M. Biswas, R. Weber, K. Tarakji, M. Chung, P. A. Noseworthy, C. Newton-Cheh, M. A. Rosenberg
This study uses machine learning to analyze dose adjustment decisions for dofetilide, finding that reinforcement learning identifies patient characteristics and dosing decisions that minimize discharge failure.
bioRxiv · Jan 27, 2019Pharmacology & Toxicology