Author
S. Gupta
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2016-2023 · peak 26/yrCo-Author Collaboration Network
10 top collaborators · 11 mutual co-author links100 papers
Recent·Most cited
- Cell BiologyPLOS PathogensPeer-reviewed
Localization of infection in neonatal rhesus macaques after oral viral challenge
T. J. Hope, R. A. Taylor, M. D. McRaven…·R. M. Ruprecht
This study uses PET and fluorescent microscopy to track HIV distribution in neonatal rhesus macaques after oral challenge, showing virions localize to the rectal mucosa by four hours and the intestine contains the most infected cells at 96 hours.
- Cancer BiologyStem Cell ReportsPeer-reviewed
CALR frameshift mutations in MPN patient-derived iPS cells accelerate maturation of megakaryocytes
K. Olschok, L. Han, M. A. S. de Toledo…·S. Koschmieder
This study shows CALR mutations in iPS cells from MPN patients accelerate megakaryocyte maturation and identify hypoxia signaling as a therapeutic target.
- BioengineeringbioRxivPreprint
Ligand geometry dictates cellular and in vivo uptake of 3D DNA nanostructures
A. Rajwar Gada, S. RS, P. Vaswani…·D. D. Bhatia
This study investigates how the geometry of 3D DNA nanostructures affects their cellular and in vivo uptake, finding that tetrahedral shapes are more efficiently internalized.
DOI 10.1101/2021.10.19.465062 - Cancer BiologybioRxivPreprint
Transcriptional variability accelerates pre-leukemia by cell diversification and perturbation of protein synthesis
S. Gupta, O. M. Dovey, A. F. Domingues…·C. Pina
Loss of Kat2a enhances transcriptional variability of ribosome biosynthetic programs and transiently accelerates pre-leukemia.
- Cancer BiologyCellular and Molecular Life SciencesPeer-reviewed
Somatic mutations in CTCF zinc fingers produce cellular phenotypes explained by structure-function relationships
J. E. Rasko, C. G. Bailey, S. Gupta…·U. Schmitz
This study identifies somatic CTCF mutations in cancer and shows how their structure-function relationships affect cellular phenotypes and tumour suppressor function.
DOI 10.1007/s00018-021-03946-z - Cell BiologybioRxiv
Oncogenic KRAS Requires Complete Loss of BAP1 Function for Development of Murine Intrahepatic Cholangiocarcinoma
R. K. Marcus, S. Ferri-Borgogno, A. Hosein…·S. Gupta
This study develops a mouse model showing that complete loss of BAP1 function is required for KRAS-driven intrahepatic cholangiocarcinoma.
DOI 10.3390/cancers13225709 - BioengineeringbioRxivPreprint
Fabrication and delivery of mechano-activedmicrocapsules containing osteogenic factors in alarge animal model of osteochondral injury
H. M. Zlotnick, R. C. Locke, S. Hemdev…·R. L. Mauck
This study develops and tests mechano-active microcapsules containing osteogenic factors in a large animal model to preserve bone structure after osteochondral injury.
DOI 10.1101/2021.09.24.461696 - Evolutionary BiologybioRxiv
Neural Basis of Acoustic Species Recognition in a Cryptic Species Complex
S. Gupta, R. K. Alluri, G. J. Rose, M. A. Bee
The paper investigates how temporal processing by midbrain auditory neurons contributes to species recognition in two cryptic treefrog species.
DOI 10.1242/jeb.243405 - Cell BiologybioRxivPreprint
Temporal regulation of Pten is essential for retina regeneration in zebrafish
S. Gupta, P. Sharma, M. Choudhary…·R. Ramachandran
This study shows that Pten downregulation is essential for zebrafish retina regeneration by promoting Muller glia-derived progenitor cell proliferation through Akt and Mmp9/Notch pathways.
DOI 10.1101/2021.07.09.451767 - BiophysicsbioRxiv
Single-molecule imaging with cell-derived nanovesicles reveals early binding dynamics at a cyclic nucleotide-gated ion channel
V. R. Patel, A. M. Salinas, D. Qi…·M. P. Goldschen-Ohm
The paper uses cell-derived nanovesicles and single-molecule imaging to study ligand binding dynamics at a cyclic nucleotide-gated ion channel, revealing previously undetected conformational changes and non-cooperative binding behavior.
DOI 10.1038/s41467-021-26816-5 - ZoologybioRxivPreprint
Three new species of nematodes from the syconia of Ficus racemosa in southern India
S. Gupta, Q. Tahseen, R. M. Borges
The paper describes three new nematode species found in the syconia of Ficus racemosa in southern India and confirms their phylogenetic relationships using rRNA gene analysis.
DOI 10.1101/2021.05.17.444399 - PathologyHeliyonPeer-reviewed
Pulmonary stromal expansion and intra-alveolar coagulation are primary causes of Covid-19 death
L. Szekely, B. Bozoky, M. Bendek…·A. Szakos
The paper presents autopsies of Covid-19 patients showing pulmonary stromal expansion and intra-alveolar coagulation as primary causes of death, with virus replication in pneumocytes and macrophages.
DOI 10.1016/j.heliyon.2021.e07134 - Cell BiologybioRxiv
Enhanced RhoA signaling stabilizes E-cadherin in migrating epithelial monolayers.
S. Gupta, K. Duszyc, S. Verma…·A. Yap
The paper shows that RhoA signaling at adherens junctions stabilizes E-cadherin during epithelial migration by increasing junctional contractility and mechanical tension.
DOI 10.1242/jcs.258767 - Plant BiologybioRxiv
Inter-chromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance
S. Gupta, A. Harkess, A. Soble…·R. S. Baucom
This study identifies loci and evolutionary forces underlying herbicide resistance in weeds, finding interchromosomal linkage disequilibrium and fitness cost loci associated with resistance.
DOI 10.1111/nph.18782 - BiophysicsbioRxiv
The role of vimentin-nuclear interactions in persistent cell motility through confined spaces
S. Gupta, A. E. Patteson, J. Schwarz
This paper develops a model showing vimentin-null cells move faster and are more persistent in confined spaces due to reduced nuclear positioning and microtubule orientation.
DOI 10.1088/1367-2630/ac2550 - Cancer BiologybioRxivPreprint
Differential expression of H2A isoforms contribute to tissue and lineage specificity with HIST2H2AC as a potential cancer biomarker
S. G. Shah, M. Rashid, A. Natu, S. Gupta
The paper investigates H2A isoform expression across normal tissues and tumors, finding tissue-specific patterns and cancer-specific overexpression of HIST2H2AC.
DOI 10.1101/2021.03.10.434738 - Cancer BiologyNature Cell BiologyPeer-reviewed
Lysosomal retargeting of Myoferlin mitigates membrane stress to enable pancreatic cancer growth
S. Gupta, J. A. Yano, H. Htwe Htwe…·R. M. Perera
This study identifies Myoferlin as a lysosomal membrane integrity factor in pancreatic cancer, showing its role in lysosome health and tumor growth.
DOI 10.1038/s41556-021-00644-7 - MicrobiologybioRxiv
The Epstein-Barr virus ubiquitin deconjugase BPLF1 regulates the activity of Topoisomerase II during virus replication
J. Li, N. Nagy, J. Liu…·M. G. Masucci
This study identifies BPLF1 as a regulator of TOP2 activity during EBV replication by modulating ubiquitination, SUMOylation, and DNA-damage response.
DOI 10.1371/journal.ppat.1009954 - BioengineeringbioRxiv
Marked differences in local bone remodeling in response to different marrow stimulation techniques in a large animal
H. M. Zlotnick, R. C. Locke, B. D. Stoeckl…·R. Mauck
This study compares three marrow stimulation techniques in minipigs, finding that needle-puncture best preserves subchondral bone compared to drilling and microfracture.
DOI 10.22203/ecm.v041a35 - MicrobiologybioRxiv
Implications of central carbon metabolism in SARS-CoV-2 replication and disease severity
S. Krishnan, H. Nordqvist, A. T. Ambikan…·U. Neogi
This study investigates how SARS-CoV-2 affects central carbon metabolism in host cells and links metabolic changes to disease severity.
DOI 10.1016/j.mcpro.2021.100159 - Plant BiologybioRxivPreprint
An HB40 - JUNGBRUNNEN1 - GA 2-OXIDASE regulatory module for gibberellin homeostasis in Arabidopsis
S. Dong, D. Tarkowska, M. Sedaghatmehr…·S. Balazadeh
This study identifies a regulatory module involving HB40, JUB1, GA2ox, and DELLA proteins that controls gibberellin homeostasis in Arabidopsis by modulating GA biosynthesis, deactivation, and signaling.
DOI 10.1101/2021.02.17.431590 - ImmunologybioRxivPreprint
Adjuvanting a subunit SARS-CoV-2 nanoparticle vaccine to induce protective immunity in non-human primates
P. S Arunachalam, A. C. Walls, N. Golden…·Coffma
This study evaluates adjuvants for a subunit SARS-CoV-2 nanoparticle vaccine in non-human primates, showing durable neutralizing antibody responses and protection against infection.
DOI 10.1101/2021.02.10.430696 - MicrobiologybioRxiv
Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells
X. Chen, E. Saccon, K. S. Appelberg…·S. Gupta
This study identifies delayed and dysregulated type-I interferon signaling in SARS-CoV-2 infected Huh7 cells and shows that IFN-I pretreatment reduces susceptibility.
DOI 10.1038/s41420-021-00487-z - ImmunologybioRxivPreprint
Sex-specific differences in the function and differentiation of ABCsmark TLR7-driven immunopathogenesis
E. Ricker, M. Manni, D. Flores-Castro…·A. B. Pernis
The paper shows sex-specific differences in ABCs expansion, ISG signature upregulation, and differentiation in TLR7-driven immunopathogenesis, with Tlr7 duplication in males exacerbating disease severity.
DOI 10.1101/2021.01.20.427400 - BiophysicsbioRxiv
Extracellular vimentin as a target against SARS- CoV-2 host cell invasion
L. Suprewicz, M. Swoger, S. Gupta…·A. E. Patteson
The paper identifies extracellular vimentin as a potential target for preventing SARS-CoV-2 infection by showing it facilitates viral entry through interaction with the spike protein and ACE2.
DOI 10.1002/smll.202105640 - ImmunologybioRxiv
A recombinant fragment of Human surfactant protein D binds Spike protein and inhibits infectivity and replication of SARS-CoV-2 in clinical samples
T. Madan, B. Biswas, P. Varghese…·U. Kishore
This study shows that a recombinant fragment of human SP-D inhibits SARS-CoV-2 spike protein binding to ACE-2 and reduces viral replication in clinical samples.
DOI 10.1165/rcmb.2021-0005oc - MicrobiologybioRxivPreprint
Antimalarial and Plasmodium falciparum serpentine receptor 12 targeting effect of a purinergic receptor antagonist FDA approved drug
S. Gupta, N. Joshi, M. Saini, S. Singh
This study evaluates the antimalarial effect of Prasugrel, an FDA-approved purinergic receptor antagonist, on Plasmodium falciparum by targeting PfSR12, a putative purinergic receptor.
DOI 10.1101/2020.12.16.423179 - MicrobiologybioRxiv
Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo Hemorrhagic Fever Viruses for novel therapeutic target
U. Neogi, N. Elaldi, S. Appelberg…·A. Mirazimi
This study uses multi-omics approaches to analyze host-viral interactions in CCHFV infection, identifying metabolic reprogramming and interferon-mediated antiviral mechanisms as potential therapeutic targets.
DOI 10.7554/elife.76071 - BiophysicsbioRxiv
Effect of Variations in the Conserved Residues E371 and S359 on the Structural Dynamics of Protein Z Dependent Protease Inhibitor (ZPI): A Molecular Dynamic Simulation Study
S. Chellam Gayathri, S. Gupta, A. Suresh…·T. Sengupta
This study uses molecular dynamics simulations to analyze how mutations at conserved residues E371 and S359 affect the structural dynamics of ZPI, revealing their role in RCL flexibility and protease inhibition.
DOI 10.1080/07391102.2021.1883114