Author
E. Kim
Memorial Sloan Kettering Cancer CenterPrimary ORCID profile (0000-0002-7817-8293 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2017-2026 · peak 15/yrCo-Author Collaboration Network
10 top collaborators · 22 mutual co-author links55 papers
Recent·Most cited
- Animal Behavior & CognitionbioRxivPreprintDOI 10.1101/2021.06.16.448133
- Cancer BiologybioRxivPreprint
The impact of the spatial heterogeneity of resistant cells and fibroblasts on treatment response
M. M.A, J.-Y. Kim, C.-H. Pan, E. Kim
The paper develops an agent-based model to study how spatial distribution of resistant cells and fibroblasts affects the success of adaptive therapy over continuous therapy in cancer treatment.
DOI 10.1101/2021.06.01.446525 - BiophysicsbioRxiv
Condensin-driven loop extrusion on supercoiled DNA
E. Kim, A. M. Gonzalez, B. Pradhan…·C. Dekker
This study investigates how condensin-driven DNA loop extrusion is influenced by supercoiling using single-molecule imaging and atomic force microscopy.
DOI 10.1038/s41594-022-00802-x - BiochemistrybioRxiv
Characterization of the ABC methionine transporter from Neisseria meningitidis reveals that MetQ is a lipoprotein
N. G. Sharaf, M. Shahgholi, E. Kim…·D. C. Rees
The paper characterizes NmMetQ, showing it is a lipoprotein that binds methionine analogs and activates its cognate ABC transporter, challenging the conventional localization of SBPs in Gram-negative bacteria.
DOI 10.7554/elife.69742 - ImmunologybioRxiv
Stress granules are shock absorbers that prevent excessive innate immune responses to dsRNA
S. Hur, M. Paget, C. Cadena…·X. Mu
This study shows stress granules regulate immune responses to dsRNA by preventing excessive inflammation and viral replication.
DOI 10.1016/j.molcel.2023.03.010 - Animal Behavior & CognitionbioRxivPreprint
SongExplorer: A deep learning workflow for discovery and segmentation of animal acoustic communication signals
B. J. Arthur, Y. Ding, M. Sosale…·D. Stern
SongExplorer uses deep learning to discover, annotate, and segment animal acoustic signals with higher accuracy than existing methods and comparable to human experts.
DOI 10.1101/2021.03.26.437280 - EcologybioRxiv
Modelling the deathbed of ASF-infected wild boars in South Korea using 2019-2020 national surveillance data
J.-S. Lim, T. Vergne, S.-I. Pak, E. Kim
This study models ASF-infected wild boar deathbeds in South Korea using surveillance data to identify spatial risk factors for ASF presence and carcass reporting.
DOI 10.3390/ani11051208 - MicrobiologybioRxiv
New SHIVs and Improved Design Strategy for Modeling HIV-1 Transmission, Immunopathogenesis, Prevention and Cure
H. Li, S. Wang, F.-H. Lee…·G. M. Shaw
This paper demonstrates that SHIVs with bulky aromatic amino acid substitutions at Env375 replicate efficiently in rhesus macaques and can be used for preclinical HIV vaccine testing.
- ImmunologybioRxivPreprint
Human gut bacteria produce TH17-modulating bile acid metabolites
D. Paik, L. Yao, Y. Zhang…·A. S. Devlin
This study identifies human gut bacteria that produce TH17-modulating bile acid metabolites, showing reduced levels in IBD patients.
DOI 10.1101/2021.01.08.425913 - Cancer BiologybioRxivPreprint
Understanding the potential benefits of adaptive therapy for metastatic melanoma
E. Kim, J. S. Brown, Z. Eroglu, A. R. A. Anderson
This study develops mathematical models to predict adaptive therapy benefits for metastatic melanoma, showing potential delays in progression by 6-25 months compared to continuous therapy.
DOI 10.1101/2020.10.16.343269 - Cancer BiologybioRxivPreprint
Diversity Across the Pancreatic Ductal Adenocarcinoma Disease Spectrum Revealed by Network-Anchored Functional Genomics
J. L. Rose, S. Srinivasan, W. Yao…·G. F. Draetta
This study introduces CoDEX, a framework that links gene-cluster patterns with genetic vulnerabilities in PDAC, revealing subtype-specific dependencies and their impact on tumor phenotypes.
- BiophysicsbioRxiv
Phase separation induced by cohesin SMC protein complexes
J.-K. Ryu, C. Bouchoux, H. W. Liu…·C. Dekker
Yeast cohesin phase separates with DNA into liquid droplets via ATP-independent DNA bridging.
DOI 10.1126/sciadv.abe5905 - Cell BiologybioRxivPreprint
Intrinsic and extrinsic factors collaborate to activate pharyngeal satellite cells without muscle injury
E. Kim, Y. Zhang, F. Wu…·H. J. Choo
This study identifies intrinsic and extrinsic factors that drive increased basal activity of pharyngeal satellite cells compared to limb muscle satellite cells.
DOI 10.1101/2020.05.21.108951 - Plant BiologybioRxivPreprint
Regulation of light harvesting in multimeric and monomeric photosystem II supercomplexes
E. Kim, A. Watanabe, C. D. P. Duffy…·J. Minagawa
The paper identifies monomeric and multimeric PSII-LHCII supercomplexes in spinach leaves and shows multimeric forms have higher light-harvesting but lower thermal dissipation capabilities under low-light conditions.
DOI 10.1101/2020.05.04.077453 - Plant BiologybioRxivPreprint
Traceback of Core Transcription Factors for Soybean Root Growth Maintenance under Water Deficit
L. Lin, J. De Velde, N. Nguyen…·H. T. Nguyen
The paper identifies core transcription factors regulating root growth in soybean under water deficit by integrating phylogenetic analysis and transcriptome data.
DOI 10.1101/2020.03.19.999482 - Cancer BiologybioRxivPreprint
Limited Environmental Serine Confers Sensitivity to PHGDH Inhibition in Brain Metastasis
B. Ngo, E. Kim, V. Osorio-Vasquez…·M. E. Pacold
This study shows that brain metastases rely on PHGDH-mediated serine synthesis due to limited environmental serine, making them sensitive to PHGDH inhibition.
DOI 10.1101/2020.03.03.974980 - ImmunologybioRxivPreprint
MyD88-Syk axis is a critical determinant for inflammatory response in macrophages
Y.-S. Yi, J. H. Kim, W. S. Yang…·J. Y. Cho
This study shows that the MyD88-Syk axis drives inflammatory responses in macrophages by promoting ROS/RNS generation and phagocytic activity through Src, F-actin, and Rac1.
DOI 10.1101/844076 - Cancer BiologybioRxivPreprint
Metastatic function of METTL18 in breast cancer via actin methylation and Src
H. G. Kim, J. H. Kim, W. S. Yang…·J. Y. Cho
This study identifies METTL18 as an actin histidine methyltransferase that enhances breast cancer metastasis by promoting actin polymerization and Src activation.
DOI 10.1101/831701 - BiophysicsbioRxiv
DNA-loop extruding condensin complexes can traverse one another
E. Kim, J. W. J. Kerssemakers, I. A. Shaltiel…·C. Dekker
This study shows yeast condensin complexes can traverse each other to form Z-loops, enabling dynamic DNA packaging and compaction through various looping structures.
DOI 10.1038/s41586-020-2067-5 - Evolutionary BiologybioRxivPreprint
How Homeostasis Limits Keratinocyte Evolution
R. O. Schenck, E. Kim, R. Bravo…·A. R. A. Anderson
This study presents a mechanistic epidermal model showing homeostasis leads to log-linear subclone size distributions in skin cells, with larger subclones being older due to persistence of driver mutations.
DOI 10.1101/548131 - MicrobiologybioRxiv
A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes
Y. Sun, E. Kim, S. A. Felt…·C. Lopez
This study identifies a specific RSV genomic sequence that regulates the generation of copy-back defective viral genomes, showing that cbDVG formation is not random and can be manipulated.
DOI 10.1371/journal.ppat.1007707 - ImmunologybioRxiv
Differential attenuation of β2 integrin-dependent and -independent neutrophil migration by Ly6G ligation
P. Cunin, P. Lee, E. Kim…·P. Nigrovic
This study shows that Ly6G ligation selectively inhibits β2 integrin-dependent neutrophil migration in specific inflammatory contexts.
DOI 10.1182/bloodadvances.2018026732 - Evolutionary BiologybioRxiv
Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida
S. Joo, M. H. Wang, G. Lui…·J.-H. Lee
The paper identifies the common ancestry of TALE homeobox transcription factors across Metazoa and Archaeplastida, showing their role in haploid-to-diploid transitions through heterodimerization.
DOI 10.1186/s12915-018-0605-5 - MicrobiologybioRxiv
Galleria mellonella as an Insect Model for P. destructans, the Cause of White-Nose Syndrome in Bats
C. N. Beekman, L. Meckler, E. Kim, R. J. Bennett
This study establishes Galleria mellonella as a model to study P. destructans virulence and screens chemicals to inhibit its growth.
DOI 10.1371/journal.pone.0201915 - Cancer BiologybioRxiv
Expanding discovery from cancer genomes by integrating protein network analyses with in vivo tumorigenesis assays
H. Horn, M. S. Lawrence, C. R. Chouinard…·K. Lage
The paper develops a method to identify new cancer genes by integrating protein network analysis with in vivo tumorigenesis assays, finding 62 new candidates and validating two in patient data.
DOI 10.1038/nmeth.4514