B. Ye

Quantifying social roles in multi-animal videos using subject-aware deep-learning

This paper introduces a subject-aware deep-learning system to quantify social roles in multi-animal groups across species and assays.

CASTpFold: Computed Atlas of Surface Topography of the universe of protein Folds

CASTpFold extends the CASTp tool to provide accurate and comprehensive protein surface topography analysis using AlphaFold2 structures and functional annotations.

Multivalent 28S rRNA Is the Organizer of the Nucleolus's Multi-layered Architecture

This study identifies 28S rRNA as a key organizer of the tripartite nucleolus structure through multivalent interactions that drive the formation of the three-layered architecture.

LabGym: quantification of user-defined animal behaviors using learning-based holistic assessment

LabGym quantifies user-defined animal behaviors using a learning-based approach, providing holistic assessment without pre-defined features or species restrictions.

Landscapes and dynamic diversifications of B-cell receptor repertoires in COVID-19 patients

This study characterizes the dynamic changes in B-cell receptor repertoires of COVID-19 patients using next-generation sequencing, revealing clonotype overlap, lineage expansion, and V gene usage patterns.

Three dimensional nanoscopy of whole cells and tissues with in situ point spread function retrieval

This paper introduces a method to achieve high-precision 3D nanoscopy across whole cells and tissues by retrieving the in situ point spread function from single-molecule data.

MicroRNA-222 regulates fluid shear stress-induced human nucleus pulposus cells degeneration through affecting c-Fos expression

This study shows microRNA-222 regulates human nucleus pulposus cell degeneration by modulating c-Fos expression under fluid shear stress.