Author

Y. Fei

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Biochemistry· 1 Bioengineering· 1 Biophysics· 1 Cancer Biology· 1 Cell Biology· 1 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:cell type annotation· 3 Research Focus:clustering· 2 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

B. Lu· 2 shared C. Liu· 2 shared Y. Ding· 2 shared C. Wang· 1 shared C. Zhong· 1 shared C.- C. J. Kuo· 1 shared C.-C. Chang· 1 shared D. Craven· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersBiochemistry

B. Lu

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Single-cell dissection of prognostic architecture and immunotherapy response in Helicobacter pylori infection associated gastric cancer

X. Zhang, G. Zhang, S. Sang, Y. Fei, X. Cao, W. Song, F. Liu, J. Che, H. Tao, H. Wang, L. Zhang, Y. Guan, S. Rong, L. Pei, S. Yao, , C. Liu

This study analyzes single-cell transcriptomes of gastric cancer with and without H. pylori infection to identify immune and angiogenic signatures predictive of immunotherapy response.

bioRxiv · May 31, 2024 · PreprintCancer Biology

Mechanisms mediating arylidene-indolinones induced degradation: thoughts on "Discovery of a Drug-like, Natural Product-Inspired, DCAF11 Ligand Chemotype"

C. Zhong, Z. Wang, Z. Li, H. Li, Q. Xu, W. Wu, C. Liu, Y. Fei, Y. Ding, B. Lu

The paper discusses discrepancies in conclusions about arylidene-indolinones' mechanism of action, suggesting possible explanations for conflicting findings on their role as DCAF11 ligands and autophagy-tethering compounds.

bioRxiv · Mar 5, 2024 · PreprintBiochemistry

Fast and universal single molecule localization using multi-dimensional point spread functions

M. Li, W. Shi, S. Liu, S. Fu, Y. Fei, L. Zhou, Y. Li

This paper introduces a GPU-based B-spline PSF modeling method for fast and accurate high-dimensional single molecule analysis.

bioRxiv · Oct 17, 2023Biophysics

Latitude influences stability via stabilizing mechanisms in naturally-assembled forest ecosystems at different spatial grains

T. Zhou, D. Craven, H. Kreft, J. Zhang, X. Wang, J. Lian, W. Ye, G. Jin, X. Mi, Y. Yao, H. Ren, J. Yang, M. Cao, C. Wang, Y. Qin, , N. R. Guerrero-Ramirez

The paper examines how latitude affects ecosystem stability in forests across different spatial scales, finding that species asynchrony and stability play key roles, with latitude influencing these mechanisms to counteract species richness effects.

bioRxiv · Dec 7, 2022 · PreprintEcology

Modeling the Degradation Effects of AutophagosomeTethering Compounds (ATTEC)

h. zhang, p. an, y. fei, b. lu

The paper models the kinetics and steady-state degradation of target proteins by autophagosome tethering compounds (ATTEC), showing how binding affinities affect degradation efficiency.

bioRxiv · Apr 1, 2020 · PreprintCell Biology

Saak Transform-Based Machine Learning for Light-Sheet Imaging of Cardiac Trabeculation

Y. Ding, V. Gudapati, R. Lin, Y. Fei, S. Song, C.-C. Chang, K. I. Baek, Z. Wang, M. Roustaei, D. Kuang, C.- C. J. Kuo, T. K. Hsiai

This paper develops a Saak transform-based machine learning framework for efficient segmentation and quantification of cardiac trabeculation in light-sheet images after chemotherapy.

bioRxiv · Oct 4, 2019Bioengineering