PIRD: Pan immune repertoire database
W. Zhang, L. Wang, K. Liu…·X. Liu
PIRD is a database that collects and stores annotated TCR and BCR sequencing data, along with tools for visualization and analysis.
Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
105 papers
Recent·Most cited
W. Zhang, L. Wang, K. Liu…·X. Liu
PIRD is a database that collects and stores annotated TCR and BCR sequencing data, along with tools for visualization and analysis.
D. Clark, S. Brazina, F. Yang…·R. Marcucio
This study shows that age-related changes in macrophages impair fracture healing in old mice, and depleting these macrophages improves healing outcomes.
R. Mao, F. Yang, D. Sun…·h. zheng
This study shows that the Gly129 residue in FMDV-VP3 enhances viral pathogenicity by promoting apoptosis and autophagy through p53 interaction, and this residue is conserved across picornaviruses.
H. Zhong, H. Ren, Y. Lu…·J. Li
The paper compares gut metagenomics and metaproteomics in prediabetics and treatment-naïve type 2 diabetics to identify host-microbial interplays across disease stages.
E. B. Graham, F. Yang, S. Bell, K. Hofmockel
The paper assesses microbial genetic potential for organic nitrogen depolymerization in northern peatlands, finding bacterial protease genes dominate over nitrogen-fixing genes.
Y. Kou, Y. He, J. Qiu…·N. I. Naqvi
This study shows that mitochondrial dynamics and mitophagy are essential for the invasive growth of Magnaporthe oryzae during rice blast disease.
W.-p. Zhou, J. Yu, M.-c. Wang…·F. Yang
This study identifies a plasma circular RNA panel with higher diagnostic accuracy than AFP for detecting HBV-related hepatocellular carcinoma.
M. Garnett, G. Picco, E. Chen…·J. Saez-Rodriguez
The paper functionally links gene fusions to cancer cell fitness using drug sensitivity and CRISPR-Cas9 data, identifying rare functional fusions and novel therapeutic targets.
P. Roots, Y. Wang, A. Rosenthal…·G. Wells
This study shows comammox Nitrospira dominate ammonia oxidation in a low dissolved oxygen nitrification reactor, outperforming conventional systems.
N. Mao, H. Xu, F. Jin…·F. Yang
The paper identifies 196 differentially expressed proteins in TGF-β1-treated lung fibroblasts and finds that VLDLR and SDC2 are upregulated in silica-exposed lungs, with knockdown reducing collagen production.
F. Yang, J. Guo, F. Huang…·W. Zeng
This study identifies a bacterial community YFMCD4 that effectively removes microcystin-LR from water, with degradation rates influenced by temperature, pH, and concentration.
G. Balmus, D. Pilger, J. Coates…·S. P. P. Jackson
The paper identifies how ATM counteracts toxic non-homologous end-joining at broken replication forks by showing that loss of NHEJ components or BRCA1-A complex confers resistance to DNA-damaging agents in ATM-deficient cells.
Y. Xiang, M. Wang, S. Hu…·Y. Zhang
This study identifies the molecular mechanisms and post-translational modifications governing the generation of distinct Nrf1α/TCF11 proteoforms and their involvement in feedback circuits with regulatory proteins.
L. Mei, Y. Yuan, M. Wu…·W. Deng
This study shows SlARF10 regulates chlorophyll and sugar accumulation in tomato fruits by controlling starch synthesis and photosynthesis.
M. A. Li, P. P. Amaral, P. Cheung…·A. Smith
The paper identifies a lncRNA/miRNA/DNA methylation axis that regulates the timing of stem cell state transition from naive pluripotency.