Author
G. Zhang
Sichuan University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2016-2026 · peak 33/yrCo-Author Collaboration Network
10 top collaborators · 39 mutual co-author links132 papers
Recent·Most cited
- MicrobiologybioRxiv
Re-emergence of Severe Acute Diarrhea Syndrome Coronavirus (SADS-CoV) in Guangxi, China, 2021
Y. Sun, J. Xing, Z. Xu…·G. Zhang
The paper identifies the re-emergence of SADS-CoV in pigs in Guangxi, China, through qPCR and metagenomic analysis, suggesting undetected circulation since 2019.
DOI 10.1016/j.jinf.2022.08.020 - Plant BiologybioRxivPreprint
Transcellular progression of infection threads in Medicago truncatula roots is controlled by locally confined cell wall modifications
C. Su, G. Zhang, M. Rodriguez-Franco…·T. Ott
The paper investigates how rhizobia move through Medicago truncatula root cells by analyzing the role of SyPME and NPL in cell wall modifications during infection thread progression.
DOI 10.1101/2022.07.07.499094 - PathologybioRxiv
Metabolomics and transcriptomics reveal the response mechanisms of Mikania micrantha to Puccinia spegazzinii infection
B. Liu, X. Ren, G. Zhang…·W. Qian
This study investigates how Mikania micrantha responds to Puccinia spegazzinii infection using metabolomics and transcriptomics, identifying changes in metabolites and gene expression.
DOI 10.3390/microorganisms11030678 - MicrobiologybioRxivPreprint
Selection and validation of reference genes for quantitative real-time polymerase chain reaction in Serratia ureilytica DW2
F. Bai, B. Bai, T. Jin…·J. Ren
This study identifies and validates stable reference genes for RT-qPCR in Serratia ureilytica DW2 under various conditions.
DOI 10.1101/2022.05.03.490547 - MicrobiologybioRxivPreprint
Subtyping evaluation of Salmonella Enteritidis using SNP and core genome MLST with nanopore reads
Z. Xian, S. Li, D. A. Mann…·X. Deng
This study evaluates the use of nanopore sequencing for SNP and cgMLST subtyping of Salmonella Enteritidis, showing high concordance with Illumina data despite sequencing errors.
DOI 10.1101/2022.05.03.490560 - Cancer BiologybioRxivPreprint
Polio Virotherapy of Malignant Glioma Engages the Tumor Myeloid Infiltrate and Induces Diffuse Microglia Activation
Y. Yang, M. C. Brown, G. Zhang…·M. Gromeier
This study investigates how PVSRIPO virotherapy activates microglia and myeloid cells in gliomas, leading to antitumor inflammation and improved outcomes when combined with PD1/PD-L1 blockade.
DOI 10.1101/2022.04.19.488771 - Cell BiologybioRxivPreprint
Separation of phosphatase and kinase activity within the Bub complex is required for proper mitosis
J. Nilsson, L. Wang, T. Kruse…·G. Zhang
This study shows that separating kinase and phosphatase activities in the Bub complex is essential for proper mitosis, as merging these functions leads to mitotic defects.
DOI 10.1101/2022.04.11.487869 - MicrobiologybioRxiv
Using Culture-Enriched Phenotypic Metagenomics for Targeted High-Throughput Monitoring of Clinically-Important Fraction of Beta-Lactam Resistome
This study uses culture-enriched phenotypic metagenomics to monitor clinically-important beta-lactam resistance genes in a wastewater treatment plant and river.
DOI 10.1021/acs.est.2c03627 - Evolutionary BiologyScience BulletinPeer-reviewed
An interactive viral genome evolution network analysis system enabling rapid large-scale molecular tracing of SARS-CoV-2
Y. Ling, R. Cao, J. Qian…·G. Zhang
This paper introduces VENAS, a system for analyzing SARS-CoV-2 genome evolution networks, enabling rapid processing and visualization of large datasets to trace viral mutations and transmission.
DOI 10.1016/j.scib.2022.01.001 - BiophysicsbioRxivPreprint
Real-time denoising of fluorescence time-lapse imaging enables high-sensitivity observations of biological dynamics beyond the shot-noise limit
This paper introduces DeepCAD-RT, a real-time denoising method for fluorescence time-lapse imaging that improves signal-to-noise ratio with fewer photons, demonstrated across multiple organisms and biological processes.
- BioengineeringbioRxivPreprint
Spinning Disk Multifocal Microscopy for Dynamic Arbitrarily Shaped Surface Imaging at Centimetre Scale and Micrometre Resolution
H. Xie, X. Han, G. Xiao…·Q. Dai
This paper introduces Spinning Disk Multifocal Microscopy (SDiM) for high-speed, high-resolution imaging of large biological surfaces, demonstrating its application in cortical and immune cell studies.
- ImmunologybioRxivPreprint
A novel intranasal administration adenoviral vector-based platform for rapid COVID-19 vaccine development
Y. Yuan, X. Gao, F. Ni…·M. Liang
This paper develops a chimpanzee adenovirus-based vaccine against the SARS-CoV-2 Delta variant and shows it induces strong immunity and protects mice from challenge.
DOI 10.1101/2022.02.21.481247 - BiophysicsbioRxivPreprint
An allosteric agonist activates BK channels by perturbing coupling between Ca2+ binding and pore opening
G. Zhang, X. Xu, Z. Jia…·J. Cui
The paper identifies BC5, an allosteric agonist that modulates BK channel activation by disrupting the coupling between Ca2+ binding and pore opening.
DOI 10.1101/2022.01.28.478270 - BioengineeringbioRxivPreprint
Rapid deep widefield neuron finder driven by virtual calcium imaging data
Y. Zhang, G. Zhang, X. Han…·Q. Dai
The paper introduces DeepWonder, a deep learning tool for rapid and accurate neuron detection in widefield calcium imaging data, achieving faster processing and improved signal-to-background ratio compared to traditional methods.
DOI 10.1101/2022.01.25.474600 - BiophysicsbioRxiv
Active forces in confluent cell monolayers
This study uses a computational model to show how active forces between cells in a monolayer affect cell shape and collective motion, revealing contractile and extensile behaviors and their effects on tissue dynamics.
DOI 10.1103/physrevlett.130.038202 - Evolutionary BiologybioRxivPreprint
Transcriptome innovations in primates revealed by single-molecule long-read sequencing
L. Ferrandez-Peral, X. Zhan, M. Alvarez-Estape…·G. Zhang
The paper uses long-read sequencing to identify novel transcripts and isoform changes in primate transcriptomes, highlighting immune-related regulatory divergence.
- Evolutionary BiologybioRxivPreprint
Severe fever with thrombocytopenia syndrome virus and parthenogenetic Asian longhorned tick Haemaphysalis longicornis (Acari: Ixodidae)
A. Zheng, Z. Zhang, G. Zhang…·Y. K. Choi
The paper investigates the role of parthenogenetic Asian longhorned ticks in spreading SFTSV, finding they contribute to rapid spread and long-range movement.
DOI 10.1101/2021.10.20.465214 - EcologybioRxiv
Local adaptation and spatiotemporal patterns of genetic diversity revealed by repeated sampling of Caenorhabditis elegans across the Hawaiian Islands
T. A. Crombie, P. Battlay, R. E. Tanny…·E. C. Andersen
This study samples C. elegans across Hawaii over three years, sequenced their genomes, and found seven genetic groups and 18 regions linked to local adaptation.
DOI 10.1111/mec.16400 - ImmunologybioRxiv
m6A modifications regulate intestinal immunity and rotavirus infection
S. Zhu, A. Wang, J. Wang…·C. Qian
This study shows that m6A modifications regulate intestinal immunity and rotavirus infection by modulating IRF7 and IFN expression through METTL3 in intestinal epithelial cells.
DOI 10.7554/elife.73628 - Evolutionary BiologybioRxiv
Mutationathon: towards standardization in estimates of pedigree-based germline mutation rates
L. A. Bergeron, S. Besenbacher, T. N. Turner…·M. H. Schierup
The paper evaluates variation in germline mutation rate estimates across labs using a standardized pedigree of rhesus macaques, highlighting methodological differences and the need for standardization.
DOI 10.7554/elife.73577 - ImmunologybioRxivPreprint
The Lambda variant of SARS-CoV-2 has a better chance than the Delta variant to escape vaccines
H. Liu, P. Wei, Q. Zhang…·G. Zhang
The paper compares vaccine efficacy against Delta and Lambda SARS-CoV-2 variants, finding Lambda has greater escape potential, with reduced antibody reactivity and therapeutic antibody binding.
DOI 10.1101/2021.08.25.457692 - Animal Behavior & CognitionbioRxivPreprint
Modeling bottlenecks, modularity, and context-dependency in behavioral control
A. Nande, V. Dubinkina, R. Ravasio…·G. J. Berman
This study uses a simple neural network model to explore how information bottlenecks affect behavioral control, showing that modular connectivity improves efficiency but increases context-dependency.
DOI 10.1101/2021.08.06.455452 - PathologybioRxiv
Molecular Pathophysiology of Cardiac Injury and Cardiac Microthrombi in Fatal COVID-19: Insights from Clinico-histopathologic and Single Nuclei RNA Sequencing Analyses
N. Fukuma, M. L. Hulke, M. I. Brener…·E. J. Tsai
This study identifies transcriptomic changes in cardiac fibroblasts associated with cardiac microthrombi in fatal COVID-19 through single nuclei RNA sequencing and clinical analyses.
DOI 10.1172/jci.insight.154633 - MicrobiologyJournal of VirologyPeer-reviewed
V367F mutation in SARS-CoV-2 spike RBD emerging during the early transmission phase enhances viral infectivity through increased human ACE2 receptor binding affinity
DOI 10.1128/jvi.00617-21 - MicrobiologybioRxivPreprint
Dual-lipid metabolomics revealed the communication of MTB or MB with Bovine alveolar macrophages in lipid metabolisms
W. Gao, Y. Cai, G. Zhang…·Y. Wang
This study uses dual-lipid metabolomics to compare lipid compositions of MTB and MB and their effects on bovine alveolar macrophages, revealing distinct metabolic responses and colonization mechanisms.
DOI 10.1101/2021.07.06.451399 - MicrobiologybioRxivPreprint
Detection of pigeon circoviruses in ticks of sheep and camels in Inner Mongolia, China
Y. Kong, C. Yan, G. Zhang…·Y. Li
The paper detects pigeon circovirus in ticks collected from sheep and camels in Inner Mongolia using high-throughput sequencing and PCR, revealing its genomic sequence and phylogenetic classification.
DOI 10.1101/2021.06.09.447674 - MicrobiologybioRxiv
Phylogenetic Analysis of Crimean-Congo Hemorrhagic Fever Virus in Inner Mongolia, China
Y. Kong, C. Yan, D. Liu…·Y. Li
This study identifies new CCHFV strains in Inner Mongolia, China, showing genetic similarities to strains from Xinjiang and South Africa, suggesting long-term prevalence in the region.
DOI 10.1016/j.ttbdis.2021.101856 - Cell BiologyCellPeer-reviewed
3D observation of large-scale subcellular dynamics in vivo at the millisecond scale
This paper introduces a method to observe 3D subcellular dynamics in vivo at high resolution and speed, demonstrating its application in various biological systems.
DOI 10.1016/j.cell.2021.04.029 - ZoologybioRxivPreprint
Revision of the genus Dichaetophora Duda (Diptera: Drosophilidae), part I: DNA bar-coding and molecular phylogenetic reconstruction
T. K. Katoh, J.-M. Chen, J.-H. Yang…·J.-J. Gao
This study uses DNA barcoding and molecular phylogenetics to revise the genus Dichaetophora, identifying cryptic species and taxonomic issues within the group.
DOI 10.1101/2021.05.28.446102