Author
J. Kim
Children's Hospital Los Angeles
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2016-2026 · peak 47/yrCo-Author Collaboration Network
10 top collaborators · 21 mutual co-author links210 papers
Recent·Most cited
- BiophysicsbioRxivDOI 10.1038/s41467-021-24963-3
- ImmunologybioRxivPreprint
Increased disease burden in Interleukin-3 deficient mice after Mycobacterium tuberculosis and herpes simplex virus infections
S. Kunnath-Velayudhan, T. W. Ng, N. K. Saini…·S. A. Porcelli
This study shows that IL-3 deficiency increases disease severity in mice infected with M. tuberculosis and HSV-1/HSV-2.
DOI 10.1101/2021.03.07.434271 - Cell BiologybioRxiv
Collagen has a unique SEC24 preference for efficient export from the endoplasmic reticulum
C.-L. Lu, S. Ortmeier, J. Brudvig…·J. Kim
The paper shows SEC24D is critical for collagen secretion, while other SEC24 paralogs also contribute, explaining tissue-specific phenotypes in SEC24 mutations.
- BiochemistrybioRxivPreprint
Spc1 regulates substrate selection for signal peptidase
C. Yim, Y. Chung, J. Kim…·H. Kim
The paper investigates the role of Spc1 in yeast, showing it shields transmembrane segments from signal peptidase cleavage, thereby influencing substrate selection.
DOI 10.1101/2021.02.02.429376 - Cancer BiologyCancer ResearchPeer-reviewed
Premalignant Nf1,Trp53-null Oligodendrocyte Precursor Cells BecomeStalled in a Heterogeneous State of Replication Stress BeforeGliomagenesis
M. Sutcliffe, R. Galvao, L. Wang…·K. Janes
This study identifies replication stress in premalignant OPCs before glioma formation using stochastic profiling in a mouse model.
DOI 10.1158/0008-5472.can-20-1037 - Plant BiologybioRxivPreprint
Small proteins modulate ion channel-like ACD6 to regulate immunity in Arabidopsis thaliana
J. Chen, L. Li, J. Kim…·W. Zhu
The paper identifies two small proteins, MHA1 and MHA1L, that modulate ACD6 activity in Arabidopsis thaliana, affecting growth and defense trade-offs through calcium influx regulation.
DOI 10.1101/2021.01.25.428077 - BioengineeringbioRxivPreprint
Design considerations of a wearable electronic-skin for mental health and wellness: balancing biosignals and human factors
Y. Khan, M. L. Mauriello, P. Nowruzi…·P. E. Paredes
The paper designs a wearable electronic-skin for mental health monitoring, finding that upper arm and forearm are optimal wear locations by balancing human factors and biosignal accuracy.
DOI 10.1101/2021.01.20.427496 - BiochemistrybioRxiv
Biophysical investigation of the dual binding surfaces of human transcription factors FOXO4 and p53
This study identifies two binding sites between FOXO4 and p53 using NMR and calorimetry, revealing their roles in promoting p21 transcription and cell senescence.
DOI 10.1111/febs.16333 - BioengineeringbioRxiv
Compressed sensing-based super-resolution ultrasound imaging for faster acquisition and high quality images
J. Kim, Q. Wang, S. Zhang, S. YOON
This paper introduces an L1H-CS based SRUS imaging technique that improves image quality and reduces acquisition time for visualizing microvasculature in vivo.
- BiophysicsbioRxiv
A possible molecular mechanism for mechanotransduction at cellular focal adhesion complexes
This paper uses theoretical modeling to predict how lipid membranes influence mechanotransduction at focal adhesions by modulating traction forces and signaling.
DOI 10.1016/j.bpr.2021.100006 - BioengineeringbioRxiv
Cell-fate decision of mesenchymal stem cells toward osteocyte differentiation is committed by cell condensed condition in spheroid culture
This study shows that 3D spheroid culture of hMSCs under osteogenesis conditions leads to osteocyte-like differentiation, mediated by actin balancing in a condensed cell state.
DOI 10.1038/s41598-021-92607-z - BioengineeringbioRxiv
Illuminating endosomal escape of polymorphic lipid nanoparticles that boost mRNA delivery
M. Herrera, J. Kim, Y. Eygeris…·G. Sahay
This study uses a Gal8-GFP reporter system to compare endosomal escape efficiency of lipid nanoparticles with cholesterol versus phytosterols, finding that LNP-Sito shows significantly enhanced escape.
DOI 10.1039/d0bm01947j - Evolutionary BiologybioRxivPreprint
Centromere drive and suppression by parallel pathways for recruiting microtubule destabilizers
T. Kumon, J. Ma, D. Stefanik…·M. Lampson
The paper shows that centromere drive is suppressed by two parallel pathways, with heterochromatin and kinetochore pathways differing in their suppression of selfish DNA effects.
DOI 10.1101/2020.11.26.400515 - PathologybioRxivPreprint
Eip74EF is a dominant modifier for ALS-FTD linked mutant VCP phenotypes in Drosophila, but not miR-34
M. R. Chalmers, J. Kim, N. C. Kim
The paper shows that Eip74EF rescues VCP mutant phenotypes in Drosophila, while miR-34 overexpression is lethal, suggesting different roles for miR-34 targets in ALS-FTD.
DOI 10.1101/2020.11.20.375360 - BioengineeringbioRxiv
Label-free bone marrow white blood cell classification using refractive index tomograms and deep learning
D. Ryu, J. Kim, D. Lim…·Y. Park
This paper presents a label-free method for classifying bone marrow white blood cells using 3D refractive index tomograms and deep learning, achieving high accuracy in subtype classification.
- MicrobiologybioRxiv
The SARS-CoV-2 RNA interactome
S. Lee, Y.-s. Lee, Y. Choi…·V. N. Kim
This study identifies 109 host factors interacting with SARS-CoV-2 RNA and reveals their roles in antiviral or proviral functions through RNP capture and knockdown experiments.
DOI 10.1016/j.molcel.2021.04.022 - BioengineeringbioRxiv
Spatially expandable fiber-based probes as a multifunctional deep brain interface
S. Jiang, D. C. Patel, J. Kim…·X. Jia
This paper introduces spatially expandable fiber-based probes for deep brain interface, enabling three-dimensional recording and stimulation of neural activity with high resolution and minimal tissue damage.
DOI 10.1038/s41467-020-19946-9 - PhysiologybioRxiv
Beta-cell specific Insr deletion promotes insulin hypersecretion and improves glucose tolerance prior to global insulin resistance
S. Skovso, E. Panzhinskiy, J. Kolic…·J. D. Johnson
This study shows that deleting the insulin receptor in beta-cells improves glucose tolerance in some mice but not others, depending on age and diet.
DOI 10.1038/s41467-022-28039-8 - EcologybioRxiv
Development of a species diagnostic molecular tool for an invasive pest, Mythimna loreyi using LAMP
H. Y. Nam, M. Kwon, H. J. Kim, J. Kim
This paper develops a LAMP assay for rapid identification of the invasive pest Mythimna loreyi using a species-specific sequence from the NADH dehydrogenase subunit 5 gene.
DOI 10.3390/insects11110817 - BiochemistrybioRxiv
Dynamic tracking and identification of tissue-specific secretory proteins in the circulation of live mice
K.-e. Kim, I. Park, J. Kim…·J. M. Suh
The paper introduces iSLET, a method to track tissue-specific secretory proteins in live mice, demonstrating its use in labeling and identifying liver-specific secreted proteomes in blood plasma.
DOI 10.1038/s41467-021-25546-y - Cell BiologybioRxivPreprint
Smad3 Regulates Smooth Muscle Cell Fate and Governs Adverse Remodeling and Calcification of Atherosclerotic Plaque
P. Cheng, r. Wirka, J. Kim…·T. Quertermous
This study shows that Smad3 in smooth muscle cells prevents harmful plaque changes in atherosclerosis by blocking specific cell transitions that lead to calcification and inflammation.
DOI 10.1101/2020.09.15.299131 - Plant BiologybioRxiv
Direct phosphorylation of HY5 by SPA1 kinase to regulate photomorphogenesis in Arabidopsis
W. Wang, I. Paik, J. Kim…·E. Huq
This study shows that SPA1 kinase directly phosphorylates HY5, affecting its stability and activity to regulate photomorphogenesis in Arabidopsis.
DOI 10.1111/nph.17332 - Cell BiologybioRxiv
Cullin3-RING ubiquitin ligases are intimately linked to the unfolded protein response of the endoplasmic reticulum
K. Kim, T. Moretti, S. Park, J. Kim
This study shows that CRL3KLHL12 and CRL3KLHL41 regulate the unfolded protein response by influencing COPII coat assembly and UPR sensors in different cell lines.
DOI 10.1091/mbc.e22-08-0383 - MicrobiologybioRxiv
The subcellular architecture of the xyl gene expression flow of the TOL catabolic plasmid of Pseudomonas putida mt-2
J. Kim, A. Goni-Moreno, V. de Lorenzo
This paper investigates the subcellular localization and spatial dynamics of xyl mRNAs in Pseudomonas putida mt-2, revealing they cluster away from the nucleoid and ribosomes, suggesting decoupled transcription and translation.
DOI 10.1128/mbio.03685-20 - Plant BiologybioRxivPreprint
Plant NLR targets P-type ATPase for executing plasma membrane depolarization leading to calcium influx and cell death
D. Choi, H.-Y. Lee, Y.-E. Seo…·H. Mang
The paper shows that the plant NLR CCA309 targets P-type ATPase to cause membrane depolarization, calcium influx, and cell death during hypersensitive response.
DOI 10.1101/2020.08.30.274688 - Cell BiologybioRxiv
Size-independent mRNA synthesis and chromatin-based partitioning mechanisms generate and maintain constant amounts of protein per cell
M. P. Swaffer, J. Kim, D. Chandler-Brown…·J. M. Skotheim
The paper identifies transcriptional and chromatin-based mechanisms that generate and maintain constant protein amounts per cell despite changes in cell size.
DOI 10.1016/j.molcel.2021.10.007 - MicrobiologybioRxivPreprint
New Genotypes and Diversity of Orientia tsutsugamushi Isolated from Scrub Typhus Patients in South Korea as Determined by Multilocus Sequence Typing
J.-H. Hwang, J. Kim, I. O. Sun…·C.-S. Lee
This study identifies new genotypes of Orientia tsutsugamushi from South Korean scrub typhus patients using MLST, finding 10 new alleles and six novel sequence types, with ST48 being the most prevalent.
DOI 10.1101/2020.08.13.249219 - BioengineeringbioRxivPreprint
Rapid generation of circulating and mucosal decoy ACE2 using mRNA nanotherapeutics for the potential treatment of SARS-CoV-2
J. Kim, A. Mukherjee, D. Nelson…·G. Sahay
This paper demonstrates the use of mRNA nanotherapeutics to generate soluble hACE2 for rapid neutralization of SARS-CoV-2 in both circulation and mucosal sites.
DOI 10.1101/2020.07.24.205583 - MicrobiologyCrystal Growth & DesignPeer-reviewed
Mainly on the Plane: Deep Subsurface Bacterial Proteins Bind and Alter Clathrate Structure
A. M. Johnson, D. J. E. Huard, J. Kim…·J. B. Glass
The paper identifies bacterial proteins that bind to gas clathrates and alter their morphology, suggesting potential industrial applications for clathrate control.
DOI 10.1021/acs.cgd.0c00855