Author
W. Song
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2018-2023 · peak 21/yrCo-Author Collaboration Network
10 top collaborators · 45 mutual co-author links68 papers
Recent·Most cited
- Plant BiologybioRxivDOI 10.1016/j.cell.2022.04.032
- BiochemistrybioRxivPreprint
N4BP1 is dimerization-dependent linear ubiquitin reader regulating TNFR1 signalling through linear ubiquitin binding and Caspase-8-mediated processing
K. W. Kliza, W. Song, I. Pinzuti…·K. Husnjak
This study identifies N4BP1 as a dimerization-dependent linear ubiquitin reader that regulates TNFR1 signaling by modulating NF-κB and apoptosis pathways.
DOI 10.1101/2021.11.02.466974 - Pharmacology & ToxicologybioRxiv
Hepatocyte cholesterol content modulates glucagon receptor signalling
E. R. McGlone, T. B. Ansell, C. Dunsterville…·B. Jones
This study shows that hepatocyte cholesterol content affects glucagon receptor signaling, with higher cholesterol reducing glucagon's ability to lower blood sugar in NAFLD.
- BiochemistrybioRxiv
Highly specific chimeric DNA-RNA guided genome editing with enhanced CRISPR-Cas12a system
H. Kim, W.-j. Lee, C. H. Kim…·S. H. Lee
The paper enhances CRISPR-Cas12a system specificity and efficiency using a chimeric DNA-RNA guide, achieving 7.41 and 7.60 times improvements respectively.
DOI 10.1016/j.omtn.2022.03.021 - Animal Behavior & CognitionbioRxivPreprint
A novel method for robust estimation of ants' walking speed and curvature on convoluted trajectories derived from their gait pattern
J. Choi, W. Kim, W. Song…·P. G. Jablonski
This paper introduces a novel algorithm to estimate ants' walking speed and curvature on convoluted trajectories, showing it is more reliable than the conventional SLD method.
DOI 10.1101/2021.08.08.455044 - BiophysicsbioRxivPreprint
PyLipID: A Python package for analysis of protein-lipid interactions from MD simulations
W. Song, R. A. Corey, B. Ansell…·M. Sansom
PyLipID is a Python package that analyzes protein-lipid interactions from molecular dynamics simulations, identifying binding sites and characterizing lipid interactions.
DOI 10.1101/2021.07.14.452312 - Plant BiologybioRxiv
Genome-wide identification and characterization of DNA/RNA differences associated with Fusarium graminearum infection in wheat
G. Yang, Y. Pan, R. Zhang…·X. Nie
This study identifies 187 DNA/RNA differences in 36 wheat genes associated with Fusarium head blight, showing their role in regulating FHB response through structural changes and miRNA interactions.
DOI 10.3390/ijms23147982 - ImmunologybioRxiv
High-affinity, neutralizing antibodies to SARS-CoV-2 can be made in the absence of T follicular helper cells
J. S. Chen, R. D. Chow, E. Song…·S. C. Eisenbarth
The paper shows that high-affinity, neutralizing antibodies against SARS-CoV-2 can be produced without T follicular helper cells through alternative pathways.
DOI 10.1126/sciimmunol.abl5652 - BiochemistrybioRxiv
Structural basis for sterol sensing by Scap and Insig
N. Yan, C. Yan, R. Yan…·H. Qian
This study determines the structure of the Scap/Insig-2 complex in the absence of 25HC, revealing structural insights into cholesterol sensing and regulatory mechanisms.
DOI 10.1016/j.celrep.2021.109299 - BiophysicsbioRxiv
Relative Affinities of Protein-Cholesterol Interactions from Equilibrium Molecular Dynamics Simulations
T. B. Ansell, L. Curran, M. R. Horrell…·R. A. Corey
This study develops a method to determine protein-lipid binding affinities from MD simulations and validates it against experimental and computational methods.
DOI 10.1021/acs.jctc.1c00547 - Cell BiologybioRxiv
Gonococcal invasion into epithelial cells depends on both cell polarity and ezrin
Q. Yu, L.-C. Wang, D. Stein, W. Song
This study shows that Neisseria gonorrhoeae invades non-polarized cervical epithelial cells more efficiently than polarized ones, driven by ezrin phosphorylation and actin dynamics.
- BiophysicsbioRxivPreprint
Focused Ultrasound Modulation of Hepatic Neural Plexus Restores Glucose Homeostasis in Diabetes
V. Cotero, H. MIWA, Z. Hirschstein…·C. Puleo
The paper demonstrates that focused ultrasound activation of the hepatic neural plexus restores glucose homeostasis in diabetes models across multiple species.
- BiochemistrybioRxiv
Identification and assessment of cardiolipin interactions with E. coli inner membrane proteins
R. A. Corey, W. Song, A. Duncan…·P. J. Stansfeld
The paper uses molecular dynamics simulations to analyze cardiolipin interactions with 42 E. coli inner membrane proteins, identifying over 700 binding sites and defining metrics for high-affinity cardiolipin binding.
DOI 10.1126/sciadv.abh2217 - MicrobiologybioRxiv
Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae
B. Estrada Bonilla, A. R. Costa, T. van Rossum…·S. J. Brouns
The paper isolates and sequences four novel bacteriophages infecting Klebsiella pneumoniae, revealing low sequence identity to known phages and potential new DNA packaging mechanisms and protein clades.
DOI 10.1093/dnares/dsab013 - Plant BiologybioRxiv
Coupling Comprehensive Transcriptome-Metabolome Association and Phylogenetic Analysis Speed Dissecion of Polyphyllins Biosynthetic Pathway
x. hua, W. Song, K. Wang…·z. Xue
This study identifies key genes in the polyphyllin biosynthetic pathway using transcriptome and metabolome data combined with phylogenetic analysis.
DOI 10.1038/s42003-022-03000-z - Plant BiologybioRxiv
Natural variations in the P-type ATPase heavy metal transporter ZmCd1 controlling cadmium accumulation in maize grains
B. Tang, M. Luo, Y. Zhang…·J. Zhao
This study identifies the ZmCd1 gene controlling cadmium accumulation in maize grains and develops molecular markers for breeding low-Cd maize varieties.
DOI 10.1093/jxb/erab254 - BiochemistrybioRxivPreprint
Characterization of LC-MS based urine metabolomics in healthy subjects across the life span
W. Sun, X. Liu, Q. Shi…·W. Song
This study characterizes urine metabolomics across the lifespan in healthy individuals, identifying age- and gender-specific metabolic patterns and pathway enrichments.
DOI 10.1101/2020.11.12.379131 - MicrobiologybioRxiv
A bacterial artificial chromosome (BAC)-vectored noninfectious replicon of SARS-CoV-2
Y. Zhang, W. Song, S. Chen…·Z. Yi
The paper develops a BAC-vectored SARS-CoV-2 replicon for antiviral screening and virus-host interaction studies, showing sensitivity to IFN-, remdesivir, and ZAP overexpression.
DOI 10.1016/j.antiviral.2020.104974 - PhysiologybioRxiv
Gonadectomy and blood sampling procedures in small size teleost models
M. R. Royan, S. Kanda, D. Kayo…·R. FONTAINE
The paper describes a protocol for gonadectomy and blood sampling in small teleost fish, specifically medaka, to study sex steroid effects on physiology.
DOI 10.3791/62006 - MicrobiologybioRxivPreprint
Pathogenicity, immunogenicity, and protective ability of an attenuated SARS-CoV-2 variant with a deletion at the S1/S2 junction of the spike protein
P. Wang, S.-Y. Lau, S. Deng…·H. Chen
This study characterizes an attenuated SARS-CoV-2 variant with a deletion at the S1/S2 junction, showing reduced pathogenicity and immunogenicity but strong protective immunity.
DOI 10.1101/2020.08.24.264192 - BioengineeringbioRxiv
Single-cell cytometry via multiplexed fluorescence prediction by label-free reflectance microscopy
S. Cheng, S. Fu, Y. M. Kim…·L. Tian
This paper introduces a label-free imaging cytometry method using deep learning to predict subcellular features from reflectance microscopy, achieving higher accuracy and throughput for single-cell analysis.
DOI 10.1126/sciadv.abe0431 - Cell BiologybioRxiv
Surface-associated antigen induces B-cell permeabilization and lysosome exocytosis facilitating antigen uptake and presentation to T-cells
F. Y. Maeda, J. J. H. van Haaren, D. B. Langley…·W. Song
The paper shows surface-associated antigen induces B-cell membrane permeabilization and lysosome exocytosis, enhancing antigen uptake and T-cell presentation.
DOI 10.7554/elife.66984 - BiophysicsBiophysical JournalPeer-reviewed
The Glycosphingolipid GM3 Modulates Conformational Dynamics of the Glucagon Receptor
This study uses molecular dynamics simulations to show that GM3 modulates the conformational dynamics of the glucagon receptor ECD and identifies a unique PIP2 interaction profile.
DOI 10.1016/j.bpj.2020.06.009 - BiophysicsbioRxivPreprint
Modulation of GPCR Oligomerisation by Conformational State and PIP2 Interactions Revealed by MD Simulations and Markov Models
W. Song, A. L. Duncan, M. Sansom
This study uses MD simulations and Markov models to show that A2aR activation increases oligomerisation diversity and connectivity, with PIP2 stabilizing protein interactions.
DOI 10.1101/2020.06.24.168260 - BiophysicsbioRxivPreprint
Membrane Insertion of MoS2 Nanosheets: Fresh vs. Aged
R. Ye, W. Song, Z. Gu, R. Zhou
This study compares the interaction of fresh and aged MoS2 nanosheets with lipid membranes, finding that fresh nanosheets have stronger binding affinity.
DOI 10.1101/2020.06.17.158378 - Cancer BiologybioRxivPreprint
Tumor-specific EphA2 receptor tyrosine kinase inhibits anti-tumor immunity by recruiting suppressive myeloid populations in NSCLC
E. F. Shiuan, W. Song, S. Wang…·J. Chen
This study shows that EphA2 overexpression in NSCLC tumors reduces T cell infiltration and increases myeloid suppressor cells, promoting immune evasion.
DOI 10.1101/2020.05.08.084830 - BiophysicsbioRxiv
Structural, in silico, and functional analysis of a Disabled-2-derived peptide for recognition of sulfatides
W. Song, C. J. Gottschalk, T.-X. Tang…·D. G. S. Capelluto
This study identifies critical residues in a Dab2-derived peptide that bind sulfatides and inhibit platelet aggregation.
DOI 10.1038/s41598-020-70478-0 - BioengineeringbioRxiv
Visible light optical coherence tomography angiography (vis-OCTA) and local microvascular retinal oximetry in human retina
W. Song, W. Shao, W. Yi…·J. Yi
This study introduces a visible light OCTA system for human retinal imaging, achieving high-speed acquisition and microvascular oximetry with sub-100 μm vessel resolution.
- Plant BiologybioRxiv
Genome-wide identification, characterization and expression analysis of the monovalent cation-proton antiporter superfamily, and their function analysis in maize salt tolerance.
M. Kong, M. Luo, J. Li…·Y. Zhao
This study identifies and characterizes ZmCPAs in maize, showing their roles in salt tolerance through expression analysis and functional validation.
DOI 10.1016/j.ygeno.2021.04.032 - BioengineeringbioRxiv
Sapphire-Supported Nanopores for Low-Noise DNA Sensing
P. Xia, J. Zuo, P. Paudel…·C. Wang
This paper introduces sapphire-supported nanopore membranes with reduced capacitance and noise, improving DNA sensing accuracy and speed compared to silicon-supported nanopores.
DOI 10.1016/j.bios.2020.112829