Author
J. Lu
University of Southern California
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2026 · peak 35/yrCo-Author Collaboration Network
10 top collaborators · 22 mutual co-author links127 papers
Recent·Most cited
- Cancer BiologybioRxivPreprint
NOTCH1 drives immune-escape mechanisms in B cell malignancies
M. Mangolini, A. Maiques-Diaz, S. Charalampopoulou…·I. Ringshausen
This study shows NOTCH1 mutations in B cell malignancies promote immune escape by upregulating PD-L1 and silencing HLA-class II, leading to poor clinical outcomes.
DOI 10.1101/2021.04.10.439192 - BiochemistrybioRxivPreprint
Phase separation of RNA-binding protein promotes polymerase engagement and transcription
W. Shao, X. Bi, B. Gao…·X. Shen
The paper investigates how RNA-binding proteins (RBPs) influence RNA polymerase II activity through phase separation, showing that RBPs like PSPC1 enhance polymerase engagement and transcription.
- BioengineeringbioRxivPreprint
Amelioration of hemophilia B through CRISPR/Cas9 induced homology-independent targeted integration
X. Chen, X. Niu, Y. Liu…·D. Li
This study uses CRISPR/Cas9 to induce homology-independent targeted integration in a rat hemophilia B model, achieving therapeutic correction with 3.66% knock-in efficiency and normalization of clotting time.
DOI 10.1101/2021.03.18.435908 - BiochemistrybioRxivPreprint
Inhibition of amyloid formation of the Nucleoprotein of SARS-CoV-2
E. Tayeb-Fligelman, X. Cheng, C. Tai…·D. Eisenberg
The paper identifies amyloid-forming segments in SARS-CoV-2 Nucleoprotein and designs peptide inhibitors based on their atomic structures to target Covid-19.
DOI 10.1101/2021.03.05.434000 - MicrobiologybioRxivPreprint
Toxoplasma gondii injected neurons localize to the cortex and striatum and have altered firing
O. A. Mendez, E. F. Machado, J. Lu, A. A. Koshy
This study identifies the localization and electrophysiological changes of Toxoplasma gondii-injected neurons in the mouse brain.
DOI 10.1101/2021.02.18.431839 - BiophysicsbioRxiv
N-Terminal finger stabilizes the reversible feline drug GC376 in SARS-CoV-2 Mpro
E. Arutyunova, M. B. Khan, C. Fischer…·M. J. Lemieux
This study characterizes the reversible inhibition of SARS-CoV-2 and SARS-CoV Mpro by GC376, showing nanomolar Ki values and domain swapping in the drug-bound structures.
DOI 10.1016/j.jmb.2021.167003 - BiochemistrybioRxiv
Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entry
X. Lei, T. Wei, J. Wang…·J. Xiao
This study develops a selective DYRK2 inhibitor, C17, and identifies novel targets like 4E-BP1 and STIM1, revealing DYRK2's role in protein synthesis and calcium entry.
DOI 10.7554/elife.77696 - MicrobiologyNature Structural & Molecular BiologyPeer-reviewed
A trimeric human angiotensin-converting enzyme 2 as an anti-SARS-CoV-2 agent in vitro
T. Xiao, J. Lu, J. Zhang…·B. Chen
This study creates a trimeric ACE2 variant with high affinity for SARS-CoV-2 spike protein and shows it inhibits viral infection in cell culture.
DOI 10.1038/s41594-020-00549-3 - Cancer BiologybioRxiv
Dependency of LKB1-inactivated lung cancer on aberrant CRTC-CREB activation
X. Zhou, J. W. Li, Z. Chen…·L. Wu
This study shows that CRTC-CREB activation drives LKB1-null lung cancer growth and identifies it as a therapeutic target.
DOI 10.7554/elife.66095 - Plant BiologybioRxivPreprint
All-Flesh Tomato Regulated by Reduced Dosage of AFF Provides New Insights into Berry Fruit Evolution
L. Liu, K. Zhang, J. Bai…·J. Li
The study identifies a 416-bp deletion in the AFF gene's promoter that reduces its expression, leading to all-flesh tomato fruits and providing insights into berry fruit evolution.
DOI 10.1101/2021.01.04.425284 - Plant BiologybioRxivPreprint
The jasmine (Jasminum sambac) genome and flower fragrances
G. Chen, S. Mostafa, Z. Lu…·B. Jin
This study presents the first de novo genome of Jasminum sambac and identifies gene clusters and pathways involved in flower fragrance biosynthesis.
DOI 10.1101/2020.12.17.420646 - MicrobiologybioRxivPreprint
Kaposi's Sarcoma Herpesvirus Is Associated with Osteosarcoma in Xinjiang Uyghur Population
Q. Chen, J. Chen, Y. Li…·Y. Yuan
This study finds a significant association between Kaposi's Sarcoma Herpesvirus (KSHV) infection and osteosarcoma in the Xinjiang Uyghur population, identifying KSHV as a potential risk factor and a newly identified viral-associated cancer.
DOI 10.1101/2020.12.11.421719 - Evolutionary BiologybioRxiv
Forensic features and genetic legacy of the Baloch population of Pakistan and the Hazara population across Durand-line revealed by Y chromosomal STRs
A. Adnan, S.-Q. Wen, A. Rakha…·J. Lu
This study analyzes Y-chromosomal STRs in Hazara and Baloch populations to reveal genetic diversity and historical interactions across the Durand-line.
DOI 10.1007/s00414-021-02591-2 - Pharmacology & ToxicologybioRxivPreprint
Discovery of rhodomyrtone as a broad-spectrum antiviral inhibitor with anti-SARS-CoV-2 activity
W. Tang, J. Lu, Q.-Y. Song…·W.-C. Ye
This paper identifies rhodomyrtone as a broad-spectrum antiviral with activity against SARS-CoV-2 and other viruses, showing potent antiviral effects and low resistance potential.
DOI 10.1101/2020.11.14.382770 - Cancer BiologyNature CancerPeer-reviewed
The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome
M. Duran-Ferrer, G. Clot, F. Nadeu…·J. I. Martin-Subero
This study analyzes DNA methylation in B-cell tumors to show its relation to proliferative history and clinical outcomes, introducing a new mitotic clock for prognosis.
DOI 10.1038/s43018-020-00131-2 - Cell BiologybioRxivPreprint
An aminoacylation independent activity of PheRS/FARS promotes growth and proliferation
The paper shows that elevated PheRS/FARS subunit expression promotes cell growth and proliferation independently of its aminoacylation activity and translation.
DOI 10.1101/2020.10.29.360420 - Cancer BiologybioRxiv
Patient-Derived Mutant Forms of NFE2L2/NRF2 Drive Aggressive Murine Hepatoblastomas
H. Wang, J. Lu, J. A. Mandel…·E. V. Prochownik
This study shows that patient-derived NFE2L2 mutants drive aggressive hepatoblastomas in mice by accelerating tumor growth and promoting necrosis and cyst formation.
DOI 10.1016/j.jcmgh.2021.02.004 - ImmunologybioRxivPreprint
Tet2 Controls Beta cells Responses to Inflammation in Type 1 Diabetes
J. Rui, S. Deng, G. Ponath…·K. C. Herold
This study identifies Tet2's role in regulating β cell responses to inflammation in Type 1 Diabetes, showing its protective effects against immune-mediated destruction.
- Cancer BiologybioRxivPreprint
Acquired deficiency of the peroxisomal enzyme enoyl-CoA hydratase/3-hydroxyacyl CoA dehydrogenase is a metabolic vulnerability in hepatoblastoma
H. Wang, X. Chen, M. Schwalbe…·E. V. Prochownik
This study shows that reducing the peroxisomal enzyme Ehadh in hepatoblastoma makes tumors more susceptible to a fatty acid metabolite, suggesting a potential metabolic therapy.
- BiochemistrybioRxivPreprint
Lanthipeptide Synthetases Participate the Biosynthesis of 2-Aminovinyl-Cysteine Motifs in Thioamitides
The paper identifies lanthipeptide synthetases as key enzymes in the biosynthesis of 2-aminovinyl-cysteine motifs in thioamitides, revealing their role in dehydration and macrocyclization.
DOI 10.1101/2020.08.21.260323 - BiophysicsAngewandte Chemie International EditionPeer-reviewed
Single-molecule 3D orientation imaging reveals nanoscale compositional heterogeneity in lipid membranes
J. Lu, H. Mazidi, T. Ding…·M. D. Lew
The paper introduces SMOLM, a single-molecule orientation localization microscopy technique, to measure orientation and spatial organization of lipophilic probes in lipid membranes, revealing compositional heterogeneity.
DOI 10.1002/anie.202006207 - MicrobiologybioRxiv
Immunoreactive peptide maps of SARS-CoV-2 and other human coronaviruses
N. Mishra, X. Huang, S. Joshi…·W. I. Lipkin
The paper identifies humoral immune responses to SARS-CoV-2 and other human coronaviruses peptides to detect infections and discover immunity biomarkers.
DOI 10.1038/s42003-021-01743-9 - PaleontologybioRxivPreprint
Endocast and bony labyrinth of a stem gnathostome shed light on the earliest diversification of jawed vertebrates
Y.-a. Zhu, S. Giles, G. Young…·J. Lu
The study analyzes the endocast and bony labyrinth of a 400-million-year-old fossil fish, suggesting that early jawed vertebrate relationships may need to be re-evaluated.
DOI 10.1101/2020.08.11.242974 - MicrobiologybioRxivPreprint
Worldwide tracing of mutations and the evolutionary dynamics of SARS-CoV-2
Z.-Y. Zhou, H. Liu, Y.-D. Zhang…·Y.-P. Zhang
The paper analyzes SARS-CoV-2 genome sequences to study mutation patterns and evolutionary dynamics, identifying mutations that may enhance viral fitness and provide insights for vaccine development.
DOI 10.1101/2020.08.07.242263 - Cancer BiologybioRxiv
Kinetics of Plasma cfDNA Predicts Clinical Response in Non-Small Cell Lung Cancer Patients
X. Zhou, C. Li, Z. Zhang…·M. Sha
This study shows that changes in plasma cfDNA levels during chemotherapy predict clinical response in NSCLC patients, with specific insights for lung adenocarcinoma.
DOI 10.1038/s41598-021-85797-z - Cancer BiologybioRxiv
Differential Mast Cell Phenotypes in Benign versus Cancer Tissues and Prostate Cancer Oncologic Outcomes
H. Hempel Sullivan, J. P. Maynard, C. M. Heaphy…·K. S. Sfanos
The paper investigates differential mast cell phenotypes in benign and cancerous prostate tissues and links higher numbers of tryptase-only mast cells to worse oncologic outcomes.
DOI 10.1002/path.5606 - BiochemistrybioRxiv
High affinity binding of SARS-CoV-2 spike protein enhances ACE2 carboxypeptidase activity
This study investigates how SARS-CoV-2 spike protein binding affects ACE2 enzymatic activity, finding it enhances proteolytic activity 3-10 fold via RBD domain interaction.
DOI 10.1074/jbc.ra120.015303