Author
S. Huang
Primary ORCID profile (0000-0002-3545-4665 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2017-2023 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 20 mutual co-author links126 papers
Recent·Most cited
- PathologybioRxivPreprint
The level of synovial human VEGFA, IL-8 and MIP-1α correlate with truncation of lubricin glycans in osteoarthritis
S. Huang, K. A. Thomsson, C. Jin…·N. G. Karlsson
This study finds that synovial levels of IL-8, MIP-1α, and VEGFA correlate with lubricin glycan truncation in OA, suggesting a link between glycan changes and local inflammation.
DOI 10.1101/2021.03.11.434779 - BioengineeringbioRxiv
In vivo co-registered hybrid-contrast imaging by successive photoacoustic tomography and magnetic resonance imaging
S. Zhang, L. Qi, X. Li…·W. Chen
This paper presents a hardware-software solution for co-registering photoacoustic tomography and MRI images in vivo, demonstrating hybrid-contrast imaging of tumor microenvironments.
- MicrobiologyJournal of General VirologyPeer-reviewed
Characterization of miRNAs encoded by Autographa californica nucleopolyhedrovirus
J. Wang, K. Xing, P. Xiong…·X. Wang
This study identifies and characterizes six AcMNPV-encoded miRNAs, showing they regulate both viral and host genes through suppression or enhancement of target expression.
DOI 10.1099/jgv.0.001510 - MicrobiologybioRxivPreprint
Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life
R. Meheust, S. Huang, R. Rivera-Lugo…·S. H. Light
The paper identifies flavinylation's role in diverse extracytosolic redox functions across bacteria through genomic analysis and gene cluster mining.
DOI 10.1101/2021.01.07.425746 - BiochemistrybioRxivPreprint
High-throughput tandem-microwell assay for ammonia repositions FDA-Approved drugs to Helicobacter pylori infection
F. Liu, J. Yu, Y. Zhang…·F. Wu
This study identifies FDA-approved drugs that inhibit urease activity in H. pylori, offering potential new treatments for infections.
DOI 10.1101/2021.01.05.425432 - MicrobiologybioRxiv
Intra-Ramanome Correlation Analysis Unveils Metabolite Conversion Network from an Isogenic Cellular Population
Y. He, S. Huang, P. Zhang…·J. Xu
The paper introduces IRCA to infer metabolite conversion networks from single-cell Raman spectra of isogenic populations without time-series data.
DOI 10.1128/mbio.01470-21 - BioengineeringbioRxiv
Functional multispectral optoacoustic tomography imaging of hepatic steatosis development in mice
S. Huang, A. Bluetke, A. Feuchtinger…·V. Ntziachristos
This study uses MSOT to non-invasively visualize lipid accumulation in mice with NAFLD, showing its potential for monitoring hepatic steatosis without contrast agents.
- EcologybioRxivPreprint
Plant sedimentary ancient DNA from Far East Russia covering the last 28 ka reveals different assembly rules in cold and warm climates
S. Huang, K. Stoof-Leichsenring, S. Liu…·U. Herzschuh
This study uses sedimentary ancient DNA to analyze plant diversity changes over 28,000 years in Far East Russia, revealing different assembly rules in cold and warm climates.
DOI 10.1101/2020.12.11.406108 - MicrobiologybioRxivPreprint
MRSA emerges through natural transformation
M. Maree, L. T. T. Nguyen, R. Ohniwa…·K. Morikawa
This study shows natural transformation in Staphylococcus aureus facilitates SCCmec transfer, contributing to MRSA emergence.
DOI 10.1101/2020.12.08.415893 - MicrobiologybioRxiv
Species-resolved sequencing of low-biomass microbiomes by 2bRAD-M
Z. Sun, S. Huang, P. Zhu…·J. Xu
This paper introduces 2bRAD-M, a low-cost metagenome-sequencing method that enables species-level microbial profiling of low-biomass and degraded samples with high accuracy.
DOI 10.1186/s13059-021-02576-9 - MicrobiologybioRxivPreprint
Comparative transcriptional profiling of the early host response to infection by typhoidal and non-typhoidal Salmonella serovars in human intestinal organoids
B. H. Abuaita, A.-L. E. Lawrence, R. P. Berger…·M. O'Riordan
This study compares host transcriptional responses to typhoidal and non-typhoidal Salmonella serovars in human intestinal organoids, revealing distinct gene expression patterns and immune responses.
DOI 10.1101/2020.11.25.397620 - ImmunologybioRxivPreprint
HLA class I genotypes customize vaccination strategies in immune simulation to combat COVID-19
This study uses immune simulation to show that HLA class I genotypes influence the effectiveness of multi-epitope vaccination strategies against SARS-CoV-2.
DOI 10.1101/2020.11.18.388983 - Cancer BiologybioRxivPreprint
Targeting hypoxic habitats with hypoxia pro-drug evofosfamide in preclinical models of sarcoma
B. V. Jardim Perassi, W. Mu, S. Huang…·R. J. Gillies
This paper develops deep-learning models to identify hypoxic tumor regions using MRI and histology, showing their effectiveness in predicting hypoxia and guiding TH-302 therapy response in sarcoma models.
- MicrobiologybioRxiv
Salmonella enterica serovar Typhimurium SPI-1 and SPI-2 shape the transcriptional landscape of epithelial cells in a human intestinal organoid model system
A.-L. E. Lawrence, B. H. Abuaita, R. P. Berger…·M. O'Riordan
This study uses human intestinal organoids to investigate how Salmonella SPI-1 and SPI-2 T3SSs influence host transcriptional responses during infection, revealing distinct and overlapping roles in inflammation and cell cycle suppression.
DOI 10.1128/mbio.00399-21 - MicrobiologybioRxivPreprint
Longitudinal multi-omics along gingivitis development reveal a suboptimal-health gum state with periodontitis-like microbiome
S. Huang, T. He, F. Yue…·J. Xu
The paper identifies a suboptimal-health gum state (SoH) during experimental gingivitis, characterized by microbiome and metabolite changes similar to periodontitis.
DOI 10.1101/2020.09.26.315127 - MicrobiologybioRxiv
JIB-04 has broad-spectrum antiviral activity and inhibits SARS-CoV-2 replication and coronavirus pathogenesis
J. Son, S. Huang, Q. Zeng…·S. Ding
The paper identifies JIB-04 as a broad-spectrum antiviral that inhibits SARS-CoV-2 replication and coronavirus pathogenesis in vitro and in vivo.
DOI 10.1128/mbio.03377-21 - Cancer BiologybioRxivPreprint
Cell-extrinsic effects in T cell acute lymphoblastic pre-leukemia stem cells mediated by EphA3
A. C. Pliego Zamora, H. Ranasinghe, J. E. Lisle…·C. I. Slape
The paper investigates the role of EphA3 in T cell acute lymphoblastic pre-leukemia stem cells, showing it enables the halt in differentiation of neighboring WT cells, allowing pre-leukemic cells to persist in the thymus.
DOI 10.1101/2020.09.14.297127 - MicrobiologybioRxivPreprint
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
C. Martino, B. P. Kellman, D. R. Sandoval…·R. Knight
This study shows that commensal bacteria modify heparan sulfate, reducing SARS-CoV-2 spike protein binding and that this bacterial presence decreases with age, increasing COVID-19 susceptibility.
DOI 10.1101/2020.08.17.238444 - MicrobiologybioRxivPreprint
Loss of RpoS results in attenuated Escherichia coli colonization of human intestinal organoids and a competitive disadvantage within the germ-free mouse intestine
M. R. Barron, R. J. Cieza, D. R. Hill…·V. B. Young
This study shows that E. coli lacking RpoS has reduced colonization ability in human intestinal organoids but not in germ-free mice, indicating different stress environments in these models.
DOI 10.1101/2020.07.30.230003 - ImmunologybioRxivPreprint
Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories
Y. Su, D. Chen, C. Lausted…·the
This study integrates multi-omic data from COVID-19 patients to identify immune response patterns linked to disease severity.
DOI 10.1101/2020.07.27.224063 - Evolutionary BiologybioRxivPreprint
Synonymous sites in SARS-CoV-2 genes display trends affecting translational efficiency
Q. Huang, G. Huan, L. Zheng…·H. Liang
The paper analyzes synonymous sites in SARS-CoV-2 genes to assess translational efficiency trends and their implications for viral adaptation and epidemic growth.
DOI 10.1101/2020.05.30.125740 - BiochemistrybioRxivPreprint
Structural basis of bile acid receptor activation and Gs coupling
F. Yang, C. Mao, L. Guo…·Y. Zhang
The paper reports cryo-EM structures of GPBAR-Gs complexes, revealing structural features of bile acid recognition, allosteric effects, and biased signaling.
DOI 10.1101/2020.05.24.104034 - MicrobiologybioRxivPreprint
In-Vivo Toxicity Studies and In-Vitro Inactivation of SARS-CoV-2 by Povidone-iodine In-situ Gel Forming Formulations
B. Liang, X. Yuan, G. Wei…·J. J. Baldwin
This study evaluates the virucidal activity and safety of Povidone-iodine in-situ gel formulations against SARS-CoV-2 in vitro and in vivo.
DOI 10.1101/2020.05.18.103184 - MicrobiologybioRxiv
PSGL-1 inhibits HIV-1 infection by restricting actin dynamics and sequestering HIV envelope proteins
Y. Liu, Y. Song, S. Zhang…·X. Tan
This study identifies PSGL-1 as an HIV restriction factor that inhibits HIV DNA synthesis and virion infectivity by restricting actin dynamics and sequestering HIV envelope proteins.
DOI 10.1038/s41421-020-0184-9 - Cancer BiologybioRxivPreprint
Single-cell RNA-sequencing of peripheral neuroblastic tumors reveals an aggressive transitional cell state at the junction of an adrenergic-mesenchymal transdifferentiation trajectory
X. Yuan, J. A. Seneviratne, S. Du…·D. R. Carter
This study uses single-cell RNA-sequencing to identify a transitional cell state in peripheral neuroblastic tumors associated with poor prognosis and therapeutic targets.
- MicrobiologybioRxivPreprint
Heterogeneous timing of asexual cycles in Plasmodium falciparum quantified by extended time-lapse microscopy
H. Park, S. Huang, K. A. Walzer…·N. E. Buchler
This study quantifies the heterogeneous timing of asexual cycles in Plasmodium falciparum using time-lapse microscopy and finds that unsynchronized cultures have a bimodal burst time distribution and that artificial synchronization does not fundamentally alter cycle dynamics.
DOI 10.1101/344812 - MicrobiologybioRxiv
Non-Toxic Virucidal Macromolecules Show High Efficacy Against Influenza Virus Ex Vivo and In Vivo
O. Kocabiyik, V. Cagno, P. Jacob Silva…·F. Stellacci
The paper develops non-toxic virucidal macromolecules effective against multiple influenza strains in vitro and in vivo.
DOI 10.1002/advs.202001012 - Evolutionary BiologybioRxivPreprint
Ancient Y chromosomes confirm origin of modern human paternal lineages in Asia rather than Africa
This paper analyzes ancient Y chromosome data to support the Asia origin model for modern human paternal lineages over the African origin model.
DOI 10.1101/2020.03.10.986042