Author
X. Ma
National Heart, Lung, and Blood Institute
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2023 · peak 23/yrCo-Author Collaboration Network
10 top collaborators · 29 mutual co-author links115 papers
Recent·Most cited
- EcologybioRxivPreprintDOI 10.1101/2021.01.26.428226
- Cancer BiologybioRxiv
P4HA2-induced prolyl hydroxylation suppresses YAP1-mediated prostate cancer cell migration, invasion, and metastasis
M. Zhu, R. Peng, X. Liang…·G. Wang
This study identifies P4HA2-dependent prolyl hydroxylation of YAP1 as a suppressor of prostate cancer cell migration, invasion, and metastasis.
DOI 10.1038/s41388-021-02000-3 - Pharmacology & ToxicologybioRxiv
Apolipoprotein M attenuates anthracycline cardiotoxicity and lysosomal injury
Z. Guo, C. Valenzuela Ripoll, A. Picataggi…·A. Javaheri
This paper investigates the role of apolipoprotein M in anthracycline cardiotoxicity, finding that ApoM protects against cardiac dysfunction and lysosomal injury through the autophagy-lysosome pathway.
DOI 10.1016/j.jacbts.2022.09.010 - Cancer BiologybioRxiv
A comprehensive map of genetic interactions in childhood cancer reveals multiple underlying biological mechanisms
J. T. Daub, S. Amini, D. J. E. Kersjes…·P. Kemmeren
The paper identifies genetic interactions in childhood cancers using a statistical pipeline, revealing 15 co-occurring and 27 mutually exclusive gene pairs, with most mechanisms linked to tumor subtypes or pathways.
DOI 10.1038/s42003-021-02647-4 - ImmunologybioRxivPreprint
Collagen induced inflammations
D. Ningchao, Y. Li, M. Xu…·L. Song
This paper describes a protocol for inducing collagen-induced arthritis (CIA) in mice using bovine collagen type II and Freund's adjuvants, and reports associated enteritis and arthritis outcomes.
DOI 10.1101/2020.11.09.373761 - BiophysicsbioRxiv
Kinetic model of small RNA-mediated regulation suggests that a small RNA can regulate co-transcriptionally
M. A. Reyer, S. Chennakesavalu, E. M. Heideman…·J. Fei
The paper develops a kinetic model to study sRNA-mediated gene regulation, revealing co-transcriptional regulation and identifying binding as a rate-limiting step.
DOI 10.1016/j.celrep.2021.109764 - PhysiologybioRxivPreprint
Intestinal ferritinophagy is regulated by HIF-2 and is essential for systemic iron homeostasis
N. K. Das, A. Sankar, A. J. Schwartz…·Y. M. Shah
This study shows HIF-2 regulates intestinal ferritinophagy via NCOA4, which is essential for systemic iron homeostasis.
DOI 10.1101/2020.11.01.364059 - Plant BiologybioRxiv
Ubiquitylome Analysis Reveals a Central Role for the Ubiquitin-Proteasome System in Plant Innate Immunity
L. Shan, X. Ma, C. Zhang…·R. D. Vierstra
The paper identifies ubiquitylated proteins in Arabidopsis during MAMP-triggered immunity, revealing the ubiquitin-proteasome system's role in immune regulation.
DOI 10.1093/plphys/kiab011 - MicrobiologybioRxiv
Unexpectedly high mutation rate of a deep-sea hyperthermophilic anaerobic archaeon
The paper reports an unexpectedly high mutation rate in Thermococcus eurythermalis, challenges the hypothesis of low mutation rates in hyperthermophiles, and links mutation rate to genome size and population dynamics.
DOI 10.1038/s41396-020-00888-5 - Cancer BiologybioRxiv
St. Jude Cloud a Pediatric Cancer Genomic Data Sharing Ecosystem
C. McLeod, A. M. Gout, X. Zhou…·Z Wang
St. Jude Cloud provides a genomic data sharing ecosystem for pediatric cancer research, offering access to over 10,000 patient genomes and enabling analysis of cancer subtypes and mutational signatures.
DOI 10.1158/2159-8290.cd-20-1230 - MicrobiologybioRxiv
Botanical Medicines with Activity against Stationary Phase Bartonella henselae
Y. Zhang, X. Ma, J. Leone, S. Schweig
This study screens herbal extracts against stationary phase Bartonella henselae and identifies five with antimicrobial activity, including Cryptolepis sanguinolenta, Juglans nigra, and Polygonum cuspidatum.
DOI 10.1097/im9.0000000000000069 - Evolutionary BiologybioRxivPreprint
Human vulnerability to cancer malignancy is enhanced by evolution of higher mesenchymal CD44 expression compared to other mammals
X. Ma, A. Dighe, J. Maziarz…·G. Wagner
This study shows that increased CD44 expression in human skin and endometrial stromal fibroblasts, compared to other mammals, correlates with higher cancer vulnerability.
DOI 10.1101/2020.08.03.234617 - Cell BiologybioRxivPreprint
A novel sodium signaling complex regulates uterine activity
J. J. Ferreira, C. Amazu, L. C. Puga-Molina…·C. M. Santi
This paper identifies a novel sodium signaling complex involving NALCN and SLO2.1 channels that regulates uterine smooth muscle cell membrane potential and contractility.
DOI 10.1101/2020.07.31.229138 - Developmental BiologybioRxivPreprint
PAK3 controls the tangential to radial migration switch of cortical interneurons by coordinating changes in cell shape and polarity
Lucie Viou, Pierre Launay, Véronique Rousseau…·Christine Métin
This study shows that PAK3 kinase activity regulates the switch from tangential to radial migration in cortical interneurons by affecting cell shape and polarity.
4 citations - Cell BiologybioRxivPreprint
Single-cell screening of SARS-CoV-2 target cells in pets, livestock, poultry and wildlife
D. Chen, J. Sun, J. Zhu…·X. Xu
The paper screens SARS-CoV-2 target cells across 11 animal species using single-cell transcriptomes, finding higher proportions in cats and detecting them in multiple pig cell types.
- BiochemistrybioRxiv
Molecular species selectivity of lipid transport creates a mitochondrial sink for di-unsaturated phospholipids
M. F. Renne, X. Bao, M. W. Hokken…·A. I. de Kroon
The paper investigates mitochondrial lipid import in yeast, showing that di-unsaturated phosphatidylserine is preferentially imported for conversion to phosphatidylethanolamine, with ERMES and Vps39p facilitating this process.
DOI 10.15252/embj.2020106837 - BiochemistrybioRxivPreprint
Adiposome Targeting and Enzymatic Activity of Lipid Droplet-Specific Proteins
X. Ma, Z. Zhi, S. Zhang…·P. Liu
The paper studies the binding and enzymatic activity of LD proteins using adiposomes, showing PI's effect on PLIN2 and ATGL.
DOI 10.1101/2020.04.27.062869 - BiochemistryChemBioChemPeer-reviewed
Responsive fluorophore aggregation provides spectral contrast for fluorescence lifetime imaging
K. A. Schleyer, B. D. Datko, B. Burnside…·L. Cui
The paper develops a fluorescent probe that changes emission lifetime upon aggregation, demonstrating potential for responsive imaging probes.
DOI 10.1002/cbic.202000056 - BioengineeringbioRxiv
Constructing an ethanol utilization pathway in Escherichia coli to produce acetyl-CoA derived compounds
H. Liang, X. Ma, W. Ning…·K. Zhou
This paper engineers Escherichia coli to convert ethanol into acetyl-CoA and its derivatives through a heterologous pathway, achieving efficient ethanol consumption and production of PHB and prenol.
DOI 10.1016/j.ymben.2020.11.010 - BiophysicsbioRxivPreprint
Investigation in scanning beampattern generated by resonance cavities
This study investigates the beampattern generated by resonance cavities in the Brown Long-Eared Bat and supports the hypothesis that frequency-driven sidelobe scanning arises from resonance in split cavities.
DOI 10.1101/2020.04.03.023663 - Cell BiologybioRxivPreprint
Live-cell 3D single-molecule tracking reveals how NuRD modulates enhancer dynamics
S. Basu, O. Shukron, D. Hall…·E. D. Laue
This study uses live-cell 3D single-molecule tracking to show that the NuRD complex decompacts chromatin and alters enhancer dynamics by increasing their movement and reducing time in a fast-diffusing state.
- MicrobiologybioRxiv
Role of RgsA in oxidative stress resistance in Pseudomonas aeruginosa
S. Hou, J. Zhang, X. Ma…·X. Song
This study shows that deletion of RgsA in Pseudomonas aeruginosa reduces growth and oxidative stress resistance in both planktonic and biofilm states.
DOI 10.1007/s00284-021-02580-z - BioengineeringbioRxivPreprint
Artificial Pinnae for Imitating Spatial Target Localization by the Brown Long-Eared Bat (Plecotus auritus)
X. Ma, S. Zhang, H. Lu…·w. Zhou
This study develops an artificial sonar system inspired by the brown long-eared bat's vertical sound localization, showing that binaural conformation and orientation are critical for spatial target localization.
- BiochemistrybioRxivPreprint
Hydrogen evolution and absorption phenomena in plasma membrane of higher plants
X. Zhang, Z. Zhang, Z. Su…·X. Ma
The paper detects hydrogen evolution and absorption in plasma membrane vesicles of higher plants using spectrophotometry, gas chromatography, and H2 sensors, revealing bidirectional H2 activity.
DOI 10.1101/2020.01.07.896852 - PhysiologybioRxiv
Transcriptomic responses to hypoxia in endometrial and decidual stromal cells
K. T. Rytkonen, T. Saloniemi, M. Mahmoudian…·G. P. Wagner
This study examines how hypoxia affects gene expression in endometrial and decidual stromal cells, identifying transcriptional changes linked to endometriosis.
DOI 10.1530/rep-19-0615 - BiochemistrybioRxivPreprint
Two distinct mechanisms of small molecule inhibition of LpxA acyltransferase essential for lipopolysaccharide biosynthesis
W. Han, X. Ma, C. J. Balibar…·T. Uehara
The paper identifies two distinct mechanisms by which small molecules inhibit LpxA acyltransferase, a key enzyme in lipopolysaccharide biosynthesis.
DOI 10.1101/850305 - BiochemistrybioRxivPreprint
Two distinct mechanisms of small molecule inhibition of LpxA acyltransferase essential for lipopolysaccharide biosynthesis
W. Han, X. Ma, C. J. Balibar…·T. Uehara
This study identifies two small-molecule inhibitors of LpxA, revealing distinct inhibition mechanisms and highlighting compound 2's improved properties for antibacterial development.
DOI 10.1101/2019.12.14.850305 - BiophysicsbioRxivPreprint
An electrostatic-interaction-based mechanism triggering misfolding of prion proteins from cellular isoform to scrapie isoform
This paper proposes an electrostatic-interaction-based mechanism for prion protein refolding from PrPC to PrPSc, identifying key steps involving hydrophobic interactions and pH changes.
DOI 10.1101/851493