Author
J. Sun
Primary ORCID profile (0009-0000-0812-1016 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2017-2024 · peak 52/yrCo-Author Collaboration Network
10 top collaborators · 32 mutual co-author links181 papers
Recent·Most cited
- Evolutionary BiologybioRxiv
Phylogenomic analyses shed light on the relationships of chiton superfamilies and shell-eye evolution
The paper uses genome and transcriptome data to resolve the phylogeny of chitons, supporting that shell eyes originated in Schizochitonoidea and evolved secondarily in other genera.
DOI 10.1007/s42995-023-00207-9 - Plant BiologybioRxivPreprint
Arabidopsis ORP2A positively regulates glucose signaling by interacting with AtRGS1 and promoting AtRGS1 degradation
DOI 10.1101/2022.11.23.517591 - Plant BiologybioRxivPreprint
PlantServation: time-series phenotyping using machine learning revealed seasonal pigment fluctuation in diploid and polyploid Arabidopsis
R. Akiyama, T. Goto, T. Tameshige…·K. K. Shimizu
PlantServation uses machine learning to analyze field images and estimate anthocyanin content in Arabidopsis, revealing seasonal fluctuations influenced by environmental factors.
DOI 10.1101/2022.11.21.517294 - BiochemistrybioRxivPreprint
O-GlcNAcylation promotes YTHDF1 cytosolic localization and colorectal cancer tumorigenesis
J. Li, M. Ahmad, L. Sang…·J. Li
This study shows O-GlcNAcylation of YTHDF1 enhances its cytosolic localization and promotes colorectal cancer by increasing c-Myc expression.
DOI 10.1101/2022.11.21.517456 - BiochemistrybioRxiv
Confocal reflectance microscopy for mapping collagen fiber organization in the vitreous gel of the eye
E. S. Hwang, D. J. Morgan, J. Sun…·B. Coats
This study uses confocal reflectance microscopy to map collagen fiber organization in porcine vitreous, revealing fiber density variations and poor alignment.
DOI 10.1364/boe.480343 - MicrobiologybioRxiv
Discovery of benzophenanthridine derivatives with potent activity against multidrug resistant Mycobacterium tuberculosis
Z. Sun, Y. C. Liang, L. Chen…·J. Sun
This study identifies two benzophenanthridine derivatives with potent anti-Mtb activity, effective against multidrug-resistant strains and comparable to rifampicin.
DOI 10.1128/spectrum.01246-24 - EcologybioRxivPreprint
The entry of pinewood nematode is linked to programmed tracheal development of vector beetles
This study links nematode entry into beetles to programmed tracheal development, showing gene expression changes and hormone activation facilitate nematode transmission.
DOI 10.1101/2022.10.29.514345 - Cancer BiologybioRxivPreprint
Extensive Dysregulation of SLK Splicing in Cancers Impacts Metastasis
Y.-Q. Yang, Y. Hu, S.-R. Zhang…·H.-H. Wei
The paper identifies SLK splicing dysregulation in cancers, showing SLK-L promotes metastasis while SLK-S inhibits it, with Rbfox2 regulating this splicing event.
DOI 10.1101/2022.10.28.514146 - Cancer BiologybioRxivPreprint
Cuproptosis is correlated with clinical status, tumor immune microenvironment and immunotherapy in colorectal cancer: a multi-omic analysis
Y. Shao, X. Fan, X. Yang…·J. Sun
This study identifies 16 cuproptosis-related molecules and develops a scoring system to predict prognosis, tumor immune microenvironment, and immunotherapy response in colorectal cancer.
DOI 10.1101/2022.09.12.507555 - BiochemistrybioRxivPreprint
Study on the interactions between cisplatin and cadherin
X. Wang, J. Sun, K.- Shao…·Z. Liu
This study investigates the interactions between cisplatin and E-cadherin using fluorescence spectroscopy and AFM, revealing strong binding and structural changes.
DOI 10.1101/2022.09.11.507507 - Evolutionary BiologybioRxiv
Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation
C. Breusing, Y. Xiao, S. Russell…·R. A. Beinart
This study compares symbiont population differentiation in deep-sea mussels with different ecological niches, finding that habitat homogeneity and mixotrophy reduce geographic structuring of symbiont strains.
DOI 10.1128/msystems.00284-23 - Plant BiologybioRxiv
Steroidal glycoalkaloids contribute to anthracnose resistance in Solanum lycopersicum
M. L. Fabian, C. Zhang, J. Sun…·J. R. Stommel
This study identifies steroidal glycoalkaloids (SGAs) as contributors to anthracnose resistance in tomato, showing higher SGA accumulation and gene expression in resistant fruit.
DOI 10.1093/jxb/erad108 - PhysiologybioRxivPreprint
Loss of TMEM65 causes mitochondrial disease mediated by mitochondrial calcium
Y. Zhang, L. Reyes, J. Sun…·B. Glancy
This study identifies TMEM65's role in mitochondrial calcium regulation, showing its loss causes mitochondrial disease and suggesting therapeutic targeting of mitochondrial calcium as a potential treatment.
DOI 10.1101/2022.08.02.502535 - Evolutionary BiologybioRxiv
Why is Babesia not killed by artemisinin like Plasmodium?
W. Si, C. Fang, C. Liu…·J. Sun
This study compares Babesia and Plasmodium genomes and gene expression to explain why Babesia is not killed by artemisinin, finding differences in haem synthesis, iron utilization, and gene expression.
DOI 10.1186/s13071-023-05783-4 - BiochemistrybioRxiv
KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion
J. Sun, L. Kinman, D. Jahagirdar…·J. H. Davis
The paper identifies KsgA's role in ribosome assembly by using cryo-EM and machine learning to show it proofreads and disassembles immature ribosomal subunits, improving assembly fidelity.
DOI 10.1038/s41594-023-01078-5 - MicrobiologybioRxivPreprint
Queuine salvaging in the human parasite Entamoeba histolytica
L. Sarid, J. Sun, J. Chittrakanwong…·S. Ankri
This study identifies EhDUF2419 as the enzyme enabling Entamoeba histolytica to salvage queuine from gut bacteria, which is essential for tRNA modification and oxidative stress resistance.
DOI 10.1101/2022.06.21.496972 - Cell BiologybioRxivPreprint
The adipose-neural axis is critically involved in cardiac arrhythmias
Y. Fan, S. Huang, S. Li…·W. Y. Li
This study shows that the adipose-neural axis contributes to cardiac arrhythmias through leptin-induced activation of sympathetic neurons and subsequent effects on cardiomyocytes.
DOI 10.1101/2022.06.12.495845 - ImmunologybioRxivPreprint
Single cell RNA sequencing reveals mechanisms underlying a senescence-like phenotype of Alveolar Macrophages during Aging
Y. Wu, B. Zhu, R. Zhang…·J. Sun
This study uses single-cell RNA sequencing to show that aged alveolar macrophages exhibit a senescence-like phenotype linked to reduced CBFβ expression and impaired self-renewal.
- Cell BiologybioRxivPreprint
Dysfunction of transfer RNA modifications in inflammatory bowel disease
J. Zhang, Y.-g. Zhang, Y. Xia, J. Sun
This study investigates the role of Q-tRNA modifications in inflammatory bowel disease, finding reduced QTRT1 expression and altered junction proteins in IBD patients and models.
DOI 10.1101/2022.05.18.492467 - Cancer BiologybioRxivPreprint
Extraintestinal roles of intestinal vitamin D receptor in protecting against dysbiosis and tumorigenesis in breast cancer
Y.-g. Zhang, J. Zhang, S. Deb…·J. Sun
This study shows that intestinal vitamin D receptor deficiency promotes breast cancer by causing gut dysbiosis, increased inflammation, and microbial translocation.
DOI 10.1101/2022.05.17.492300 - MicrobiologybioRxiv
Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials
J. Sun, A. Prabhu, S. Aroney, C. Rinke
This study examines the gut microbiome of superworms fed polystyrene, identifying bacteria and enzymes involved in polystyrene degradation and highlighting negative impacts on microbial diversity.
DOI 10.1099/mgen.0.000842 - BioengineeringbioRxivPreprint
Spatiotemporal atlas of the fetal brain depicts cortical developmental gradient in Chinese population
This study constructs a spatiotemporal MRI atlas of fetal brain development in Chinese fetuses, revealing a central-to-peripheral cortical growth gradient and dynamic structural asymmetry.
- ImmunologybioRxiv
Suppression of tumor/host intrinsic CMTM6 drives anti-tumor cytotoxicity in a PD-L1 independent manner
Y. Long, R. Chen, X. Yu…·L. Gong
This study shows that suppressing CMTM6 in tumors or hosts enhances anti-tumor immunity independently of PD-L1, suggesting CMTM6 as a target for gene therapy.
- Cancer BiologybioRxivPreprint
Discovery of new senolytics using machine learning
V. Smer-Barreto, A. Quintanilla, R. J. Elliot…·D. A. Oyarzun
This paper uses machine learning to discover three new senolytic compounds by screening FDA-approved drugs and clinical candidates.
DOI 10.1101/2022.04.26.489505 - BiophysicsbioRxiv
Structural basis of human LRRK2 membrane recruitment and activation
H. Zhu, F. Tonelli, D. R. Alessi, J. Sun
This study determines cryo-EM structures of LRRK2-Rab29 complexes, revealing the structural basis of LRRK2 membrane recruitment and activation, and identifies potential targets for Parkinson's disease treatment.
- PhysiologybioRxivPreprint
Mass extravasation and tubular uptake of red blood cells results in toxic injury to the tubules during kidney ischemia from venous clamping
S. R. McLarnon, C. Johnson, J. Sun…·P. M. O'Connor
This study shows that venous clamping in rats causes severe kidney tubular injury due to red blood cell extravasation and uptake, which is absent in blood-free kidneys.
- Cancer BiologybioRxivPreprint
RNA helicase DDX5 mediates adaptive response to multi-kinase inhibitors in liver cancer
Z. Li, J. Sun, N. Rahman…·O. Andrisani
This study shows that mTKIs like sorafenib downregulate DDX5, leading to activation of Wnt/β-catenin and non-canonical NF-κB pathways, which enable ferroptosis escape and mTKI resistance in liver cancer.
DOI 10.1101/2022.03.31.486452 - EcologybioRxiv
Hypoxia-induced tracheal elasticity in vector beetle facilitates the loading of pinewood nematode
X. Tang, J. Zhou, T.-M. Koski…·J. Sun
The paper shows that hypoxia induced by pinewood nematode (PWN) loading increases tracheal elasticity and ECM thickness in beetles, enhancing PWN transmission.
DOI 10.7554/elife.84621 - Plant BiologybioRxivPreprint
Evidence for the role of music on the growth and signal response in duckweed
Z. Ye, R. Yang, Y. Xue…·L. Yang
This study shows that music increases protein content and photosynthetic efficiency in duckweed and activates Glu and Ca signaling, with transcriptomic changes linked to metabolic pathways.
DOI 10.1101/2022.03.25.485777