Author
S. Li
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2017-2025 · peak 90/yrCo-Author Collaboration Network
10 top collaborators · 42 mutual co-author links344 papers
Recent·Most cited
- BiochemistrybioRxiv
Noninvasive optical detection of Granzyme B from natural killer cells using enzyme-activated fluorogenic probes
T. Janiszewski, S. Kolt, D. Kaiserman…·P. Kasperkiewicz
This study develops a fluorogenic probe for detecting Granzyme B activity in natural killer cells and demonstrates its use in analyzing GrB localization and function in cytotoxic cells.
DOI 10.1074/jbc.ra120.013204 - MicrobiologybioRxivPreprint
Ratiometric quorum sensing in Enterococcus faecalis conjugation
A. Banderas, A. Carcano, E. Sia…·A. B. Lindner
The paper shows that Enterococcus faecalis uses ratiometric sensing to control plasmid conjugation, favoring vertical transfer under low mating likelihood and preventing overstimulation.
DOI 10.1101/2019.12.11.871699 - ImmunologybioRxivPreprint
Regulation of heterotopic ossification through local inflammatory monocytes in a mouse model of aberrant wound healing
A. K. Huber, M. Sorkin, C. Hwang…·B. Levi
This study identifies TGFβ1-producing monocytes/macrophages as drivers of heterotopic ossification in a mouse model and shows CD47 activation can reduce HO by modulating these cells.
- MicrobiologybioRxiv
Specific gyrA gene mutations correlate with high prevalence of discordant levofloxacin resistance in Mycobacterium tuberculosis isolates from Beijing, China
The paper identifies specific gyrA gene mutations in Mycobacterium tuberculosis isolates that cause discordant levofloxacin resistance between molecular and phenotypic testing.
DOI 10.1016/j.jmoldx.2020.06.010 - BiochemistrybioRxiv
Structure-function analyses of a keratin heterotypic complex identify specific keratin regions involved in intermediate filament assembly
C.-H. Lee, M.-S. Kim, S. Li…·P. A. Coulombe
The paper determines the crystal structure of a keratin 5 and 14 2B domain complex and identifies key interactions critical for intermediate filament assembly.
DOI 10.1016/j.str.2020.01.002 - MicrobiologybioRxivPreprint
Novel regulation from novel interactions: Identification of an RNA sponge that controls the levels, processing and efficacy of the RoxS riboregulator of central metabolism in Bacillus subtilis
S. Durand, A. Callan-Siddat, J. McKeown…·E. L. Denham
The paper identifies RosA, a sponge RNA in Bacillus subtilis, which regulates RoxS and FsrA sRNAs, linking carbon metabolism regulators to post-transcriptional control.
DOI 10.1101/814905 - BiophysicsbioRxiv
Amino and PEG-Amino Graphene Oxide Grids Enrich and Protect Samples for High-resolution Single Particle Cryo-electron Microscopy
F. Wang, Z. Yu, M. Betegon…·D. Agard
This paper introduces amino and PEG-amino functionalized graphene oxide grids to improve sample concentration, distribution, and protection for cryo-EM.
DOI 10.1016/j.jsb.2019.107437 - Cancer BiologybioRxiv
Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis
Y. A. Evrard, A. SRIVASTAVA, J. Randjelovic…·J. Morris
The paper tests the reproducibility of PDX drug responses and sequence results across different labs using standardized protocols and workflows.
DOI 10.1158/0008-5472.can-19-3101 - Cell BiologybioRxiv
Changes in the expression of interleukin-10 in myocardial infarction and its relationship with macrophage activation and cell apoptosis
w. yang, s. li, y. zhao…·x. shang
This study examines changes in IL-10 expression in myocardial infarction and its association with macrophage activation and cardiomyocyte apoptosis over time.
DOI 10.21037/atm-20-3349 - MicrobiologybioRxiv
The bacterial leader peptide peTrpL has a conserved function in antibiotic-dependent posttranscriptional regulation of ribosomal genes
H. Melior, S. Maass, M. Stoetzel…·E. Evguenieva-Hackenberg
The paper identifies peTrpL as a conserved bacterial leader peptide that, along with rnTrpL, mediates tetracycline-dependent destabilization of ribosomal protein mRNAs.
DOI 10.1093/nar/gkab093 - ImmunologybioRxivPreprint
CpG-ODN 2007 protects zebrafish against Vibrio vulnificus-induced infection
H. Chen, L. Zhang, S. Li…·C. Lin
This study shows CpG-ODN 2007 reduces mortality and toxicity in zebrafish infected with Vibrio vulnificus and modulates immune gene expression.
DOI 10.1101/780742 - MicrobiologybioRxiv
Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences
M. E. Mechan Llontop, P. Sharma, M. Aguilera Flores…·B. A. Vinatzer
The paper tests metagenomic sequencing with ONT MinION for strain-level identification of bacterial tomato pathogens, achieving success with Pto but showing challenges with field samples.
DOI 10.1094/phyto-09-19-0351-r - BioengineeringbioRxivPreprint
Generation of highly diverse peptide library by linear-double-stranded DNA based AND gate genetic circuit in mammalian cells
The paper develops a method to generate diverse peptide libraries in mammalian cells using an ldsDNA-based AND gate genetic circuit, demonstrating sequence and length diversity through HTS and identifying an MDM2-interacting peptide.
DOI 10.1101/392498 - MicrobiologybioRxivPreprint
Structural changes in the gut microbiome of short-term and long-term medical workers compared to normal controls
N. Zheng, Q. Yan, Y. Ma…·Y. Xin
This study compares the gut microbiome of short-term and long-term medical workers to normal controls, finding significant structural changes linked to hospital exposure.
DOI 10.1101/772590 - Cancer BiologybioRxiv
Expressed barcodes enable clonal characterization of chemotherapeutic responses in chronic lymphocytic leukemia
A. Al'Khafaji, C. Gutierrez, E. Brenner…·C. J. Wu
This paper develops a method to study clonal responses to chemotherapy in CLL by combining barcoding with single-cell RNA sequencing, revealing that rare drug-tolerant clones dominate post-treatment populations.
- Cancer BiologybioRxivPreprint
A novel xenograft model of human HCC in immunocompetent mouse
This paper establishes a novel human HCC patient-derived xenograft model in immunocompetent mice, showing high tumor formation rates and preserved tumor characteristics.
DOI 10.1101/762351 - MicrobiologybioRxivPreprint
Arginine-GlcNAcylation of death domain and NleB/SseK proteins is crucial for bacteria pathogenesis by regulating host cell death
This study identifies arginine-GlcNAcylation as a mechanism by which bacterial effectors NleB and SseKs modulate host death receptor signaling to promote pathogenesis.
DOI 10.1101/746883 - BiochemistrybioRxiv
Measurement of Atom Resolvability in CryoEM Maps with Q-scores
G. Pintilie, K. Zhang, Z. Su…·W. Chiu
The paper introduces Q-scores to quantify atom resolvability in cryoEM maps and validates their reproducibility across different labs.
DOI 10.1017/s1431927620021170 - BiophysicsbioRxiv
Ribosolve: Rapid determination of three-dimensional RNA-only structures
K. Kappel, K. Zhang, Z. Su…·R. Das
Ribosolve rapidly determines 3D RNA-only structures using cryo-EM, chemical mapping, and Rosetta modeling, validated by multiple benchmarks and showing high accuracy.
DOI 10.1038/s41592-020-0878-9 - Cancer BiologybioRxivPreprint
Partial absence of PD-1 expression by tumor-specific CD8+ T cells in EBV-driven lymphoepithelioma-like carcinoma: a case report
Y. SIMONI, E. Becht, S. Li…·E. W. NEWELL
This study reports the absence of PD-1 expression on EBV-specific CD8+ T cells in LELC, suggesting anti-PD1/PD-L1 therapy may not be effective for this cancer type.
DOI 10.1101/696278 - Plant BiologybioRxiv
CELLULOSE SYNTHASE INTERACTIVE1- and Microtubule-Dependent Cell Wall Architecture Is Required for Acid Growth in Arabidopsis Hypocotyls
X. Xin, L. Lei, Y. Zheng…·Y. Gu
The paper investigates the role of CSI1 and microtubules in cell wall architecture during acid growth in Arabidopsis hypocotyls, finding that CSI1-dependent crossed-polylamellate walls are essential for auxin-induced cell elongation.
DOI 10.1093/jxb/eraa063 - BiochemistryProceedings of the National Academy of SciencesPeer-reviewed
Compartmentalized Biosynthesis of Mycophenolic Acid
This paper elucidates the compartmentalized biosynthetic pathway of mycophenolic acid, revealing subcellular localization of enzymes and cooperation with β-oxidation machinery.
DOI 10.1073/pnas.1821932116 - MicrobiologybioRxiv
Glutathione is Required for Efficient Post-Golgi Trafficking of Incoming HPV16 Genome
S. Li, M. P. Bronnimann, S. J. Williams, S. K. Campos
This study shows that glutathione (GSH) is necessary for efficient post-Golgi trafficking of HPV16 genome to the nucleus.
DOI 10.1371/journal.pone.0225496 - BiophysicsbioRxiv
Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors
S. Li, E. B. Zheng, L. Zhao, S. Liu
This study investigates the nonreciprocal and conditional cooperativity between Sox2 and Oct4 in nucleosome targeting using single-molecule fluorescence microscopy.
DOI 10.1016/j.celrep.2019.07.103 - ImmunologybioRxiv
Extensive adaptive immune response of AAVs and Cas proteins in non-human primates
Y. Chen, P. Xiao, R. Bai…·W. Ji
The paper investigates pre-existing adaptive immune responses to CRISPR Cas proteins and AAVs in non-human primates and finds such immunity is普遍存在 regardless of Cas proteins or AAVs.
DOI 10.1016/j.scib.2021.02.009 - ImmunologybioRxiv
Augmentation of T-cell activation by oscillatory forces and engineered antigen-presenting cells
F. S. Majedi, M. M. Hasani-Sadrabadi, T. J. Thauland…·M. Butte
This study shows that oscillatory movement of engineered antigen-presenting cells enhances T-cell activation and expands regulatory T cells more effectively than static cultures.
DOI 10.1021/acs.nanolett.9b02252 - Cell BiologyeLifePeer-reviewed
Electron Cryo-Tomography Provides Insight into Procentriole Architecture and Assembly Mechanism
S. Li, J.-J. Fernandez, W. Marshall, D. Agard
The paper uses electron cryo-tomography to reveal the structure and assembly mechanism of procentrioles in Chlamydomonas reinhardtii, identifying key components and intermediates.
DOI 10.7554/elife.43434