Author
Y. Cao
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2018-2024 · peak 29/yrCo-Author Collaboration Network
10 top collaborators · 37 mutual co-author links85 papers
Recent·Most cited
- Pharmacology & ToxicologybioRxivDOI 10.7554/elife.83659
- ImmunologybioRxivPreprint
The specific roles of renal macrophages in monitoring and clearing off intratubular particles
J. He, Y. Cao, Q. Zhu…·X. Z. Shen
This study identifies the role of renal macrophages in clearing intratubular particles and preventing kidney stone formation through phagocytosis and transmigration.
- Cell BiologybioRxivPreprint
A conserved mechanism regulates reversible amyloids via pH-sensing regions
G. Cereghetti, V. M. Kissling, L. M. Koch…·M. Peter
This study identifies a conserved mechanism by which pH-sensing regions regulate reversible amyloid formation in pyruvate kinase across yeast and human cells.
- Cancer BiologybioRxiv
A multispecies framework for modeling adaptive immunity and immunotherapy in cancer
This paper develops a predator-prey model to simulate tumor-immune interactions and immunotherapy response using preclinical and clinical data.
DOI 10.1371/journal.pcbi.1010976 - ImmunologybioRxivPreprint
Omicron BA.2 specifically evades broad sarbecovirus neutralizing antibodies
Y. Cao, A. Yisimayi, F. Jian…·X. S. Xie
This study shows that BA.2 causes stronger antibody evasion than BA.1, particularly in SARS convalescents, and identifies key mutations responsible for this escape.
DOI 10.1101/2022.02.07.479349 - BiophysicsbioRxivPreprint
Toward Atomistic Models of Intact SARS-CoV-2 via Martini Coarse-Grained Molecular Dynamics Simulations
D. Wang, J. Li, L. Wang…·C. Song
This study constructs multiscale models of SARS-CoV-2 using coarse-grained molecular dynamics simulations and experimental data, revealing dynamic behavior of membrane proteins and lipid interactions.
DOI 10.1101/2022.01.31.478415 - BiophysicsbioRxiv
Binding of Human ACE2 and RBD of Omicron Enhanced by Unique Interaction Patterns Among SARS-CoV-2 Variants of Concern
S. Kim, Y. Liu, M. Ziarnik…·W. Im
This study quantifies how Omicron variant's RBD mutations enhance binding affinity to ACE2 compared to the original SARS-CoV-2 strain.
DOI 10.1002/jcc.27025 - PhysiologybioRxivPreprint
Reduced mesophyll conductance by cell wall thickening and chloroplasts decreasing driven the decline of photosynthesis under sole NH4+ supply
y. cao, Y. Pan, T. Liu…·S. Guo
This study shows that sole NH4+ supply reduces photosynthesis in Lonicera Japonica by decreasing mesophyll conductance, driven by thicker cell walls and reduced chloroplast surface area.
DOI 10.1101/2022.01.05.475041 - Cancer BiologybioRxiv
Neural stemness unifies cell tumorigenicity and pluripotent differentiation potential
M. Zhang, Y. Liu, L. Shi…·Y. Cao
The paper shows that neural stemness unifies tumorigenicity and pluripotent differentiation potential by demonstrating SETDB1's role in maintaining these properties through epigenetic and transcriptional mechanisms.
DOI 10.1016/j.jbc.2022.102106 - Pharmacology & ToxicologybioRxiv
An enzyme-based system for the extraction of small extracellular vesicles from plants
K. Zhao, g. sun, q. zhao…·f. liu
This study develops an enzyme-based method to extract plant extracellular vesicles, showing higher yield and therapeutic potential compared to traditional methods.
DOI 10.1038/s41598-023-41224-z - Cell BiologybioRxiv
Myofibroblast Senescence Promotes Arrhythmogenic Remodeling in the Aged Infarcted Rabbit Heart
B. Baggett, K. Murphy, E. Sengun…·G. Koren
This study shows that myofibroblast senescence in aged infarcted rabbit hearts promotes arrhythmogenic remodeling by coupling with myocytes and prolonging action potential duration.
DOI 10.7554/elife.84088 - Plant BiologybioRxiv
TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death
DOI 10.1016/j.cell.2022.04.032 - ImmunologybioRxiv
Longitudinal immune cell profiling in early systemic lupus erythematosus
T. Sasaki, S. Bracero, J. Keegan…·D. A. Rao
This study tracks immune cell changes in early systemic lupus erythematosus using mass cytometry and identifies longitudinal shifts in Tfh cells and CXCL10.
DOI 10.1002/art.42248 - MicrobiologybioRxiv
The Lyme Disease agent co-opts adiponectin receptor-mediated signaling in its arthropod vector
X. Tang, y. cao, G. Arora…·E. Fikrig
This study identifies a tick metabolic pathway involving ISARL that Borrelia burgdorferi exploits to establish infection, suggesting a mechanism for manipulating host metabolism.
DOI 10.7554/elife.72568 - BiophysicsbioRxiv
Differential Interactions Between Human ACE2 and Spike RBD of SARS-CoV-2 Variants of Concern
This study uses molecular dynamics and experiments to analyze how mutations in SARS-CoV-2 variants affect their binding to ACE2, identifying which variants are more contagious.
DOI 10.1021/acs.jctc.1c00965 - ImmunologybioRxivPreprint
NSUN2-mediated m5C methylation of IRF3 mRNA negatively regulates type I interferon responses
H. Wang, L. Zhang, C. Zeng…·Y. Chen
This study shows NSUN2-mediated m5C methylation of IRF3 mRNA reduces type I interferon responses by promoting IRF3 mRNA degradation, and NSUN2 levels decrease during viral infection to enhance antiviral immunity.
DOI 10.1101/2021.07.09.451748 - BioengineeringbioRxivPreprint
Converting Muscle-mimetic Biomaterials to Cartilage-like Materials
This paper develops a protein hydrogel that mimics articular cartilage by combining physical entanglements and force-induced unfolding, achieving mechanical properties comparable to natural cartilage.
DOI 10.1101/2021.05.18.444710 - BiophysicsbioRxivPreprint
Decoding Angiotensin II Type 1 Receptor Allosteric Communication to Gq and β-arrestin
A. K. Nivedha, Y. Cao, S. Lee…·N. Vaidehi
This study identifies residue networks mediating allosteric communication from the Ang II binding site to Gq and β-arrestin2 coupling sites in AT1R, revealing shared and distinct residues that could guide biased ligand design.
DOI 10.1101/2021.05.17.444454 - MicrobiologybioRxiv
Histone acetyltransferases and deacetylases are required for virulence, conidiation, DNA damage repair, and multiple stresses resistance of Alternaria alternata
This study identifies the roles of histone acetyltransferases and deacetylases in the growth, virulence, stress resistance, and DNA repair of Alternaria alternata through gene deletion mutants.
DOI 10.3389/fmicb.2021.783633 - BiophysicsbioRxiv
Dynamic Interactions of Fully Glycosylated SARS-CoV-2 Spike Protein with Various Antibodies
Y. Cao, Y. K. Choi, M. Frank…·W. Im
This study uses molecular dynamics simulations to analyze SARS-CoV-2 spike protein interactions with antibodies, revealing structural dynamics and mutation impacts on neutralization.
DOI 10.1021/acs.jctc.1c00552 - PathologyHeliyonPeer-reviewed
Pulmonary stromal expansion and intra-alveolar coagulation are primary causes of Covid-19 death
L. Szekely, B. Bozoky, M. Bendek…·A. Szakos
The paper presents autopsies of Covid-19 patients showing pulmonary stromal expansion and intra-alveolar coagulation as primary causes of death, with virus replication in pneumocytes and macrophages.
DOI 10.1016/j.heliyon.2021.e07134 - Plant BiologybioRxiv
Dissecting the co-transcriptome landscape of plants and microbiota members
T. Nobori, Y. Cao, F. Entila…·K. Tsuda
This study profiles co-transcriptomes of Arabidopsis and its associated bacteria to understand molecular interactions and bacterial adaptation mechanisms.
DOI 10.15252/embr.202255380 - ImmunologybioRxivPreprint
The PD-L1 and TLR7 dual-targeting nanobody-drug conjugate exerts potent antitumor efficacy by orchestrating innate and adaptive immune responses
X. Yu, Y. Long, B. Chen…·L. Gong
The paper develops a PD-L1 and TLR7 dual-targeting nanobody-drug conjugate that synergistically activates innate and adaptive immune responses, showing potent antitumor effects in both 'hot' and 'cold' tumors.
DOI 10.1101/2021.04.11.439388 - MicrobiologybioRxiv
A spatial and cellular distribution of neurotropic virus infection in the mouse brain revealed by fMOST and single cell RNA-seq
Y. Zhang, X. Xing, B. Long…·L. Zhao
This study uses fMOST and scRNA-seq to map the spatial and cellular distribution of rabies virus in the mouse brain, revealing infection in multiple nuclei and non-neuronal cells.
DOI 10.1002/ctm2.700 - BioengineeringbioRxiv
Gold nanocluster mediated delivery of siRNA to intact plant cells for efficient gene knockdown
H. Zhang, Y. Cao, D. Xu…·P. Yang
This paper develops a method using gold nanoclusters to deliver siRNA into plant cells, achieving efficient gene knockdown with minimal toxicity.
DOI 10.1021/acs.nanolett.1c01792 - BiophysicsbioRxiv
Self-organization of Tissue Growth by Interfacial Mechanical Interactions in Multi-layered Systems
T. Chen, Y. Zhao, X. Zhao…·Y. Fan
The paper shows that morphogenesis in multi-layered tissues is self-organized by interfacial mechanical interactions that create compression gradients, leading to stratification or 2D morphogenesis depending on tissue fluidity.
DOI 10.1002/advs.202104301 - BiochemistrybioRxiv
Intrinsic bias at non-canonical, β-arrestin-coupled seven transmembrane receptors
S. Pandey, P. Kumari, M. Baidya…·A. K. SHUKLA
The paper identifies two non-canonical GPCRs, D6R and C5aR2, that exclusively couple to β-arrestins and exhibit distinct GRK preferences and downstream signaling.
DOI 10.1016/j.molcel.2021.09.007 - Cell BiologybioRxiv
Coordinated regulation of ribosomes and proteasomes by PRMT1 in the maintenance of neural stemness of cancer cells and neural stem cells
L. Chen, M. Zhang, L. Fang…·Y. Cao
The paper shows PRMT1 maintains neural stemness by coordinating ribosomes and proteasomes through arginine methylation, preventing degradation and supporting protein homeostasis in cancer and neural stem cells.
- Cancer BiologybioRxiv
High throughput functional screening for next generation cancer immunotherapy using droplet-based microfluidics
Y. Wang, R. Jin, B. Shen…·h. Zhang
This paper develops a droplet-based microfluidics platform for high-throughput functional antibody screening, identifying potent cancer immunotherapeutics like CD40 agonists and anti-Her2/anti-CD3 bispecific antibodies.
DOI 10.1126/sciadv.abe3839