Author
D. Chen
Primary ORCID profile (0000-0001-6672-9716 · 3 papers)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2017-2026 · peak 34/yrCo-Author Collaboration Network
10 top collaborators · 41 mutual co-author links132 papers
Recent·Most cited
- BioengineeringbioRxiv
Voxelated Bioprinting of Mechanically Robust Multiscale Porous Scaffolds for Pancreatic Islets
J. Zhu, Y. He, L. Kong…·L. Cai
This paper introduces a 3D bioprinting technique called DASP to create mechanically robust, multiscale porous scaffolds for encapsulating human pancreatic islets to enable responsive insulin release.
DOI 10.1002/adfm.202109004 - BiochemistrybioRxivPreprint
Capture of Viruses and Microorganisms in Aerosols Using A Newly Designed Collection System: A Proof-of-concept Study
D. Chen, A. P. Devin, E. R. Caton…·W. A. Bryden
The paper introduces a new aerosol collection system with high physical and biochemical capture efficiency for viruses and microorganisms, enabling better disease transmission studies and public health monitoring.
DOI 10.1101/2021.06.05.447210 - ImmunologybioRxivPreprint
CNS antigen-specific control of early B-lineage development in the meninges
Y. Wang, D. Chen, D. Xu…·H. Xu
The paper identifies meninges as a site for B cell development and CNS-antigen-specific negative selection in mice and NHPs.
DOI 10.1101/2021.06.03.446985 - BiophysicsbioRxiv
Lipid Bilayer Induces Contraction of the Denatured State Ensemble of a Helical-Bundle Membrane Protein
K. Gaffney, R. Guo, M. D. Bridges…·H. Hong
This study investigates the conformation and dynamics of the denatured state ensemble (DSE) of a membrane protein in a native lipid bilayer, finding it is dynamic and partially expanded.
DOI 10.1073/pnas.2109169119 - BioengineeringbioRxiv
A novel MRI-based data fusion methodology for efficient, personalised, compliant simulations of aortic haemodynamics
C. Stokes, M. Bonfanti, Z. Li…·V. Diaz
This paper introduces an MRI-based data fusion method for simulating aortic haemodynamics, achieving accurate and efficient patient-specific compliant simulations without CT data.
DOI 10.1016/j.jbiomech.2021.110793 - MicrobiologybioRxivPreprint
Fluorescence-Activated Droplet Sorting of Polyethylene terephthalate-degrading Enzymes
Y. Qiao, R. Hu, D. Chen…·W. Du
This paper develops a fluorescence-activated droplet sorting pipeline to screen for PET-degrading microorganisms and enzymes, identifying new PETase candidates from environmental samples.
DOI 10.1101/2021.05.12.443719 - Pharmacology & ToxicologybioRxiv
Host bioenergetic parameters reveal cytotoxicity of anti-tuberculosis drugs undetected using conventional viability assays.
B. M. Cumming, Z. Baig, K. W. Addicott…·A. J. Steyn
This study uses extracellular flux analysis to detect anti-tuberculosis drug cytotoxicity in different cell types, revealing effects not captured by conventional viability assays.
DOI 10.1128/aac.00932-21 - BiochemistrybioRxiv
Chemoproteomic study uncovers HemK2/KMT9 as a new target for NTMT1 bisubstrate inhibitors
D. Chen, Y. Meng, D. Yu…·R. Huang
The paper identifies HemK2/KMT9 as a new target of NTMT1 bisubstrate inhibitor NAH-C3-GPKK through chemoproteomic profiling.
DOI 10.1021/acschembio.1c00279 - BiophysicsbioRxiv
Biophysical properties of a tau seed
Z. Hou, D. Chen, B. D. Ryder, L. A. Joachimiak
This study characterizes the biophysical properties of tau seeds, showing they are monomeric and can nucleate tau aggregation in vitro and in cells.
DOI 10.1038/s41598-021-93093-z - BiophysicsbioRxiv
Improving localization precision via restricting biomolecule confined stochastic motion in SMLM
This study investigates stochastic motion of biomolecules in SMLM and shows that restricting this motion improves localization precision.
DOI 10.1515/nanoph-2021-0481 - Evolutionary BiologybioRxiv
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
Z. Huang, I. Furo, V. Peona…·L. Xu
This study identifies recurrent chromosome fusions and gene losses in parrots, revealing the role of transposable elements and genetic drift in neo-sex chromosome evolution.
DOI 10.1038/s41467-022-28585-1 - Evolutionary BiologybioRxiv
Comparative Population Genetics in the Human Gut Microbiome
W. R. Shoemaker, D. Chen, N. R. Garud
The paper explores comparative population genetics in the human gut microbiome to identify evolutionary trends and functional categories under different selection pressures.
DOI 10.1093/gbe/evab116 - Plant BiologybioRxiv
An angiosperm NLR atlas reveals that NLR gene reduction is associated with ecological specialization and signal transduction component deletion
DOI 10.1016/j.molp.2021.08.001 - Cancer BiologybioRxivPreprint
Prediction of occult tumor progression via platelet RNAs in a mouse melanoma model: a potential new platform of cancer screening for early detection of cancer
Y. Yin, R. Jiang, M. Shen…·D. Chen
This paper identifies platelet RNAs that predict occult tumor progression in a mouse melanoma model, showing high diagnostic accuracy for early cancer detection.
DOI 10.1101/2021.02.09.430530 - Cell BiologybioRxiv
High-resolution Cell Atlas of Pig Lung and Online Platform Exploring for Lung Single Cell
L. Zhang, J. Zhu, H. Wang…·X. Zhang
The paper generates a single-cell atlas of pig lung using scRNA-seq and develops an online platform to explore lung single-cell data across species.
DOI 10.1016/j.jgg.2021.03.012 - MicrobiologybioRxivPreprint
A comprehensive transcriptome analysis reveals broader but weaker host response of SARS-CoV-2 than SARS-CoV
C. S. Leung, S. Xie, J. Feng…·A. Dai
This study compares the transcriptome responses of SARS-CoV and SARS-CoV-2 in human cell lines, finding broader but weaker host responses for SARS-CoV-2.
DOI 10.1101/2020.12.19.423597 - MicrobiologybioRxivPreprint
Sterilizing immunity against SARS-CoV-2 in hamsters conferred by a novel recombinant subunit vaccine
y. wu, X. Huang, L. Yuan…·N. Xia
This paper develops a subunit vaccine against SARS-CoV-2 that induces sterilizing immunity in hamsters, with high neutralizing antibody titers and protection against infection and symptoms.
- MicrobiologybioRxivPreprint
Identification of four linear B-cell epitopes on the SARS-CoV-2 spike protein able to elicit neutralizing antibodies
L. Li, Z. Zhao, X. Yang…·J. Zhang
The paper identifies four linear B-cell epitopes on the SARS-CoV-2 spike protein that can elicit neutralizing antibodies in multiple species.
DOI 10.1101/2020.12.13.422550 - Cancer BiologybioRxivPreprint
Exposure of mammary cells to lipid activates gene expression changes associated with ER-negative breast cancer via chromatin remodeling.
S. Yadav, R. Virk, C. Chung…·S. Clare
The paper shows lipid exposure alters gene expression and chromatin features in mammary cells, linking these changes to ER-negative breast cancer development.
DOI 10.1101/2020.12.13.422540 - Cancer BiologybioRxiv
ORMDL1 is upregulated and associated with favorable outcome in colorectal cancer
Q. Wang, W. Liu, S. Chen…·D. Chen
This study shows ORMDL1 is upregulated in colorectal cancer and associated with better patient survival.
DOI 10.1016/j.tranon.2021.101171 - Cancer BiologybioRxivPreprint
Spatiotemporal Dynamics of Intra-tumoral Dependence on NEK2-EZH2 Signaling in Glioblastoma Cancer Progression
J. Wang, M. S. Pavlyukov, D. Yamashita…·I. Nakano
This study identifies NEK2-EZH2 signaling as critical for glioblastoma tumor core progression and resistance, and presents a novel inhibitor CMP3a that shows therapeutic potential.
DOI 10.1101/2020.12.01.405696 - MicrobiologybioRxiv
Resuscitation of soil microbiota after > 70-years of desiccation
J. Zhao, D. Chen, W. Gao…·M. Hernandez
This study assesses bacterial abundance and diversity in 70-year-old desiccated soils, showing significant resuscitation potential and activity of certain taxa after rewetting.
DOI 10.1016/j.ejsobi.2021.103290 - ImmunologybioRxiv
Identification of Cross-Reactive CD8+ T Cell Receptors with High Functional Avidity to a SARS-CoV-2 Immunodominant Epitope and Its Natural Mutant Variants
C. Hu, M. Shen, X. Han…·A. Jin
The paper identifies cross-reactive CD8+ T cell receptors with high functional avidity to a SARS-CoV-2 epitope and its variants, showing their ability to activate and kill infected cells.
DOI 10.1016/j.gendis.2021.05.006 - PathologybioRxiv
Allantoin induces pruritus by activating MrgprD in chronic kidney disease
Z. Tang, y. yang, y. sun…·X. Dong
This study shows allantoin induces pruritus in CKD by activating MrgprD and TRPV1 in DRG neurons.
DOI 10.1002/jcp.30977 - MicrobiologybioRxiv
Diversity and dynamics of fungi during spontaneous fermentations and association with unique aroma profiles in wine
D. Liu, J.-L. Legras, P. Zhang…·K. Howell
The paper investigates fungal and yeast communities in spontaneous wine fermentations, finding geographic differentiation and S. cerevisiae's role in shaping wine aroma profiles.
DOI 10.1016/j.ijfoodmicro.2020.108983 - BiochemistrybioRxiv
Discovery of a Potent and Dual-Selective Bisubstrate Inhibitor for Protein Arginine Methyltransferase 4/5
A. A. Al-Hamashi, D. Chen, Y. Deng…·R. Huang
The paper designs and synthesizes a potent dual-selective bisubstrate inhibitor for PRMT4/5, demonstrating high potency and selectivity with IC50 values of 2.8 nM and <1.5 nM.
DOI 10.1016/j.apsb.2020.10.013 - ImmunologybioRxiv
Oxidized Lipids and CD36-Mediated Lipid Peroxidation in CD8 T Cells Suppress Anti-Tumor Immune Responses
S. Xu, O. Chaudhary, P. Rodriguez-Morales…·S. M. Kaech
This study identifies CD36-mediated lipid peroxidation driven by oxidized lipids as a mechanism suppressing anti-tumor CD8 T cell functions in murine tumors.
DOI 10.1016/j.immuni.2021.05.003 - Cell BiologybioRxiv
Distinct effects of different matrix proteoglycans on collagen fibrillogenesis and cell-mediated collagen reorganization
DOI 10.1038/s41598-020-76107-0 - Cell BiologybioRxiv
The ESCRT protein CHMP5 restricts bone formation by controlling endolysosome-mitochondrion-mediated cell senescence
F. Zhang, Y. Wang, L. Zhang…·X. Ge
This study shows that CHMP5 regulates bone formation by controlling endolysosome-mitochondrion-mediated cell senescence, and targeting senescent cells can alleviate musculoskeletal abnormalities.
DOI 10.7554/elife.101984