Author
D. Chen
Primary ORCID profile (0000-0001-6672-9716 · 3 papers)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2017-2026 · peak 34/yrCo-Author Collaboration Network
10 top collaborators · 41 mutual co-author links138 papers
Recent·Most cited
- Plant BiologybioRxiv
Rice potassium transporter OsHAK18 mediates phloem K+ loading and redistribution
L. Shen, Q. Wu, W. Fan…·W. Zhang
This study identifies OsHAK18 as a phloem-localized K+ transporter that mediates K+ loading and redistribution in rice, enhancing shoot K+ retention under low-K+ stress.
DOI 10.1111/tpj.16371 - PhysiologybioRxivPreprint
Injury and a program of fetal wound healing in the fetal and neonatal extrahepatic bile duct
I. E. M. de Jong, M. L. Hunt, D. Chen…·R. G. Wells
This study investigates the fetal response to injury in extrahepatic bile ducts (EHBDs) and identifies a fetal wound healing program characterized by high molecular weight HA, which may lead to obstruction in biliary atresia.
- MicrobiologyProceedings of the National Academy of SciencesPeer-reviewed
EpicPCR-Directed Cultivation of a Candidatus Saccharibacteria Symbiont Reveals a Type IV Pili-dependent Epibiotic Lifestyle
B. Xie, J. Wang, Y. Nie…·W. Du
This study isolates a CPR bacterium using epicPCR and reveals its type IV pili-dependent epibiotic lifestyle and twitching motility.
DOI 10.1073/pnas.2215990119 - MicrobiologyCell Host & MicrobePeer-reviewed
Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine
Y. Wu, S. Wang, Y. Zhang…·N. Xia
This study develops a bivalent vaccine using lineage-mosaic and mutation-patched spike proteins that elicit broad-spectrum antibodies and protect against multiple SARS-CoV-2 variants in hamsters.
DOI 10.1016/j.chom.2022.10.011 - Plant BiologybioRxivPreprint
The Cation/H+ exchanger OsCAX2 is involved in cadmium tolerance and accumulation through vacuolar sequestration in rice
W. Zou, J. Zhan, L. Meng…·G. Ye
This study identifies OsCAX2 as a key gene for cadmium tolerance and accumulation in rice by promoting vacuolar sequestration, reducing grain cadmium levels by over 70%.
DOI 10.1101/2022.11.22.517486 - Cell BiologybioRxiv
Gaq-PKD/PKCμ regulates the IkB transcription to limit the NF-kB mediated inflammatory response essential for early pregnancy
Y. Jiang, Y. He, S. Liu…·G. Shi
This study shows that Gaq-PKD/PKCμ regulates IκB transcription to limit NF-κB-mediated inflammation, essential for successful early pregnancy.
DOI 10.7554/elife.83083 - Evolutionary BiologybioRxivPreprint
Tinamou egg color displacement at eco-geographical and song space overlap
The paper examines how tinamou egg coloration relates to mating signals and eco-geographical distribution, finding associations with song variables and differences in similar habitats.
DOI 10.1101/2022.09.27.509793 - PhysiologybioRxivPreprint
A small-molecule lycorine derivative protects from obesity by targeting Na+/K+-ATPase α3 independent of food intake suppression
L. Li, H. Zhang, Y. Zhou…·X. Hao
The paper identifies HLY72, a small-molecule derivative of lycorine, as an anti-obesity agent that targets Na+/K+-ATPase α3 in the brain, promoting lipolysis and thermogenesis without affecting food intake.
DOI 10.1101/2022.08.24.505199 - ImmunologybioRxivPreprint
A microglia-CD4+ T cell partnership generates protective anti-tumor immunity to glioblastoma
D. Chen, S. K. Varanasi, T. Hara…·S. M. Kaech
This study identifies a microglia-CD4+ T cell interaction that enhances anti-glioblastoma immunity through IFN-gamma-mediated tumor surveillance and phagocytosis.
DOI 10.1101/2022.08.12.502093 - BiophysicsbioRxivPreprint
FTD-tau S320F mutation stabilizes local structure and allosterically promotes amyloid motif-dependent aggregation
D. Chen, A. Wosztyl, V. Mullapudi…·L. A. Joachimiak
This study investigates how the FTD-tau S320F mutation stabilizes local structure and promotes amyloid motif-dependent aggregation through allosteric effects.
DOI 10.1101/2022.08.11.503511 - MicrobiologyCell ResearchPeer-reviewed
Omicron-specific mRNA vaccine elicits potent immune responses in mice, hamsters, and nonhuman primates
Y. Wu, Y. Shen, N. Wu…·Y. Wang
This study develops an Omicron-specific mRNA vaccine that shows superior neutralizing antibody responses in mice, hamsters, and macaques compared to existing vaccines.
- Cell BiologybioRxivPreprint
Metformin Alleviates Arthrofibrosis in Rat via Fibroblast Metabolic Reprogramming
Z. Zhu, S. Gao, H. Zhu…·H. Chen
This study shows metformin reduces arthrofibrosis in rats by altering fibroblast metabolism, shifting it from oxidative phosphorylation to aerobic glycolysis.
DOI 10.1101/2022.07.05.498844 - PathologybioRxiv
In-depth investigation of microRNA-mediated cross-kingdom regulation between Asian honey bee and microsporidian
X. Fan, W. Zhang, K. Zhang…·R. Guo
This study investigates microRNA-mediated cross-kingdom regulation between Asian honey bee and microsporidian using RNA-seq and small RNA-seq data, identifying miRNA-target mRNA interactions and their roles in glycolysis, virulence, and immune response.
DOI 10.3389/fmicb.2022.1003294 - PathologybioRxivPreprint
CircRNA-regulated immune response of Asian honey bee workers to microsporidian infection
Z. Zhu, J. Wang, X. Fan…·R. Guo
This study identifies circRNAs in Asian honey bee midguts infected with Nosema ceranae and shows their role in regulating immune responses through miRNA targeting and pathway involvement.
DOI 10.1101/2022.06.30.498258 - MicrobiologybioRxivPreprint
Biosynthetic diversification of peptaibol mediates fungus-mycohost interactions
The paper investigates how peptaibol structural diversity in Trichoderma fungi mediates interactions with mycohosts, showing that these compounds are essential for inhibiting saprotrophic fungi.
DOI 10.1101/2022.06.05.494846 - ImmunologybioRxivPreprint
Reduced Neutralization of SARS-CoV-2 Omicron Variant in Sera from SARS-CoV-1 Survivors after 3-dose of Vaccination
X. Zhao, D. Chen, X. Hao…·R. Jin
This study shows that SARS-CoV-1 survivors vaccinated with ZF2001 have reduced neutralization against SARS-CoV-2 Omicron compared to other variants.
DOI 10.1101/2022.05.21.492903 - BiophysicsbioRxivPreprint
Single Particle Tracking With Compressive Sensing Using Progressive Refinement Method On Sparse Recovery (spt-PRIS)
X. Yi, R. Shrestha, T. McDonald…·P.-T. Bremer
This study introduces spt-PRIS, a new single particle tracking method that improves localization in high-density datasets with overlapping PSFs, showing effectiveness for KRAS4b subpopulation analysis.
DOI 10.1101/2022.05.13.491828 - Cell BiologybioRxivPreprint
A new model of Notch signaling: Control of Notch receptor cis-inhibition via Notch ligand dimers
D. Chen, Z. Forghany, X. Liu…·D. Baker
This study demonstrates that Notch ligand dimers mediate cis-inhibition of Notch receptor activity, introducing a new model of Notch signaling that distinguishes between ligand monomer-driven transactivation and dimer-mediated cis-inhibition.
DOI 10.1101/2022.05.09.491117 - Plant BiologybioRxivPreprint
The mitogen-activated protein kinase kinase kinase, ILK5, regulates plant purinergic receptor-mediated, innate immunity
D. Kim, D. Chen, N. Ahsan…·G. Stacey
This study identifies ILK5 as a downstream substrate of P2K1 kinase that mediates MAPK cascade activation in Arabidopsis, enhancing innate immunity through phosphorylation of MPK3/6.
DOI 10.1101/2022.04.19.488815 - BiophysicsbioRxivPreprint
Identification and calibration of ultrabright localizations to eliminate quantification error in SMLM
This paper identifies and calibrates ultrabright localizations in SMLM to improve quantification accuracy for biomolecular organization.
DOI 10.1101/2022.04.06.487310 - Cell BiologybioRxiv
Versican binds collagen via its G3 domain and regulates the organization and mechanics of collagenous matrices
D. Chen, Y. Du, J. Llewellyn…·R. G. Wells
This study identifies versican as a collagen-binding protein that regulates collagen matrix organization and mechanics through its G3 domain.
DOI 10.1016/j.jbc.2024.107968 - EcologyeLifePeer-reviewed
Aggregation pheromone 4-vinylanisole promotes the synchrony of sexual maturation in female locusts
D. Chen, L. Hou, J. Wei…·X. Wang
This study identifies 4-vinylanisole as an aggregation pheromone that promotes sexual maturation synchrony in gregarious female locusts through a juvenile hormone/vitellogenin pathway.
DOI 10.7554/elife.74581 - Evolutionary BiologybioRxiv
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome
N. Madi, D. Chen, R. Wolff…·N. R. Garud
The paper shows that community diversity in the human gut microbiome is linked to intra-species genetic diversity and gene loss, supporting both Diversity Begets Diversity and Black Queen Hypothesis mechanisms.
DOI 10.7554/elife.78530 - PhysiologyeLifePeer-reviewed
SOX4 facilitates PGR protein stability and FOXO1 expression conducive for human endometrial decidualization
H. Wang, P. Huang, W. Deng…·S. Kong
This study identifies SOX4 as a critical regulator of human endometrial decidualization by modulating PGR stability and FOXO1 expression, linking its dysregulation to infertility and pregnancy complications.
DOI 10.7554/elife.72073 - PathologyNature AgingPeer-reviewed
Kindlin-2 preserves integrity of the articular cartilage to protect against osteoarthritis
X. Wu, Y. Lai, S. Chen…·G. Xiao
This study identifies Kindlin-2 as a protective factor in articular cartilage, showing its role in preventing osteoarthritis through regulation of Stat3 and Runx2 pathways.
DOI 10.1038/s43587-021-00165-w - Evolutionary BiologybioRxiv
Three amphioxus reference genomes reveal gene and chromosome evolution of chordates
H. Zhen, L. Xu, C. Cai…·Q. Zhou
This study presents three amphioxus reference genomes, revealing insights into chordate gene and chromosome evolution, including WGDs, chromatin architecture, and sex chromosome dynamics.
DOI 10.1073/pnas.2201504120 - Cancer BiologybioRxiv
Single-nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma
This study uses snRNA-seq and Stereo-seq to analyze the immunological microenvironment of cervical squamous cell carcinoma, identifying immune cell clusters and their associations with tumor progression and patient survival.
- Cell BiologybioRxiv
Molecular mechanisms governing circulating immune cell heterogeneity across different species revealed by single cell sequencing
Z. Li, c. Sun, F. Wang…·W. Qiu
This study uses single-cell RNA-sequencing to analyze immune cell diversity across 12 species, revealing conserved and divergent molecular mechanisms and cellular interactions.
DOI 10.1002/ctm2.689