Author
J. Martinez
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2018-2023 · peak 6/yrCo-Author Collaboration Network
10 top collaborators · 18 mutual co-author links22 papers
Recent·Most cited
Transgenic expression of cif genes from Wolbachia strain wAlbB recapitulates cytoplasmic incompatibility in Aedes aegypti.
C. J. McNamara, T. H. Ant, T. Harvey-Samuel, H. White-Cooper, J. Martinez, L. Alphey, S. P. Sinkins
This study shows that expressing cifA and cifB genes from Wolbachia strain wAlbB in Aedes aegypti testes induces CI-like sterility, which can be rescued by maternal cifA expression.
bioRxiv · Sep 1, 2023 · PreprintMicrobiology
Dynamic PRC1-CBX8 stabilizes a porous structure of chromatin condensates
M. Uckelmann, V. Levina, C. Taveneau, X. H. Ng, V. Pandey, J. Martinez, S. Mendiratta, J. Houx, M. Boudes, H. Venugopal, S. Trepout, Q. Zhang, S. Flanigan, M. Li, E. Sierecki, , C. Davidovich
This study uses cryo-electron tomography to reveal that PRC1-CBX8 condensates are porous and dynamic, challenging the notion of rigid chromatin compaction in gene repression.
bioRxiv · May 8, 2023Biophysics
DNA repair and anti-cancer mechanisms in the longest-living mammal: the bowhead whale
D. Firsanov, M. Zacher, X. Tian, Y. Zhao, T. L. Sformo, G. Tombline, S. A. Biashad, A. Gilman, N. Hamilton, A. Patel, M. Straight, M. Lee, J. Y. Lu, E. Haseljic, A. Williams, , Gladyshev
This study investigates DNA repair mechanisms in bowhead whales, showing their high efficiency and accuracy in repairing DNA damage, which may explain their long lifespan without cancer.
bioRxiv · May 7, 2023 · PreprintCancer Biology
Mechanistic basis for oxidative stress protection of the human tRNA ligase complex by the oxidoreductase PYROXD1
L. Loeff, A. Kroupova, I. Asanovic, F. M. Boneberg, M. M. Pfleiderer, A. Ferdigg, F. Ackle, J. Martinez, M. Jinek
The paper identifies how PYROXD1 protects the tRNA ligase complex from oxidative stress through structural and functional interactions.
bioRxiv · Apr 6, 2023 · PreprintBiochemistry
Metabolic Signatures of Performance in Elite World Tour Professional Cyclists
T. Nemkov, F. Cendali, D. Stefanoni, J. Martinez, K. C. Hansen, I. San-Millan, A. D'Alessandro
This study identifies metabolic signatures in elite cyclists during training and competition, revealing differences in metabolite profiles between exercise modes and race stages.
bioRxiv · Sep 13, 2022 · PreprintBiochemistry
Structural and functional insight into the plant unique multimodular triphosphosphate tunnel metalloenzymes of Arabidopsis thaliana
M. Pesquera, J. Martinez, K. Wang, M. Hofmann, S. Loubery, P. Steensma, M. Hothorn, T. B. Fitzpatrick
This study characterizes the structural and functional properties of two multimodular triphosphosphate tunnel metalloenzymes in Arabidopsis thaliana, revealing their roles in developmental transitions.
bioRxiv · Mar 18, 2022 · PreprintPlant Biology
Synthetic Multiantigen MVA Vaccine COH04S1 Protects Against SARS-CoV-2 in Syrian Hamsters and Non-Human Primates
F. Chiuppesi, V. H. Nguyen, Y. Park, H. Contreras, V. Karpinski, K. Faircloth, J. Nguyen, M. Kha, D. Johnson, J. Martinez, A. Iniguez, Q. Zhou, T. Kaltcheva, P. Frankel, S. Kar, , D. J. Diamond
This paper shows that the synthetic multiantigen MVA vaccine COH04S1 protects against SARS-CoV-2 in Syrian hamsters and non-human primates through various vaccination routes and dose regimens.
npj Vaccines · Jan 21, 2022Peer-reviewedImmunology
Wolbachia strain wAu differs in cellular perturbation and virus inhibition profiles from previously characterised Wolbachia strains
S. Rainey, V. Geoghegan, D. Lefteri, T. Ant, J. Martinez, C. McNamara, S. P. Sinkins
This study compares the cellular perturbation and antiviral profiles of Wolbachia strain wAu with other strains, finding unique features in its virus inhibition mechanisms.
bioRxiv · Sep 2, 2021 · PreprintMicrobiology
Molecular architecture of the human tRNA ligase complex
A. Kroupova, F. Ackle, F. M. Boneberg, A. Chui, S. Weitzer, M. Faini, A. Leitner, R. Aebersold, J. Martinez, M. Jinek
This study presents biochemical and structural analysis of the human tRNA ligase complex, revealing its molecular architecture and catalytic mechanism.
bioRxiv · Jul 11, 2021Biochemistry
A Newcastle disease virus-vector expressing a prefusion-stabilized spike protein of SARS-CoV-2 induces protective immune responses against prototype virus and variants of concern in mice and hamsters
W. Sun, Y. Liu, F. Amanat, I. Gonzalez-Dominguez, S. McCroskery, S. Slamanig, L. Coughlan, V. Rosado, N. Lemus, S. Jangra, R. Rathnasinghe, M. Schotsaert, J. Martinez, K. Sano, I. Mena, , P. Palese
This study develops a Newcastle disease virus-based vaccine expressing a prefusion-stabilized SARS-CoV-2 spike protein, showing strong immune responses and cross-neutralization against variants in mice and hamsters.
bioRxiv · Jul 6, 2021 · PreprintImmunology
Cerebrospinal fluid (CSF) boosts metabolism and virulence expression factors in Acinetobacter baumannii
J. Martinez, C. Razo-Gutierrez, C. Li, R. Courville, C. Pimentel, C. Liu, S. Fung, A. J. Vila, P. Shahrestani, V. Jimenez, M. Tolmasky, S. A. Becka, K. M. Papp-Wallace, R. A. Bonomo, A. Soler, , M. S. Ramirez
This study shows that cerebrospinal fluid (CSF) enhances virulence factor expression and metabolic processes in low-virulence Acinetobacter baumannii strains.
Scientific Reports · Feb 26, 2021Peer-reviewedMicrobiology
Dichloroacetate reverses sepsis-induced hepatic metabolic dysfunction
R. Mainali, M. Zabalwi, D. Long, N. Buechler, E. Quillen, C.-C. Key, X. Zhu, J. Parks, C. Furdui, P. Stacpoole, J. Martinez, C. E. McCall, M. A. Quinn
This study shows dichloroacetate reverses sepsis-induced hepatic metabolic dysfunction by targeting mitochondrial PDC/PDK energy homeostasis in a mouse model.
eLife · Feb 22, 2021Peer-reviewedImmunology
Single Cell RNA-seq and Mass Cytometry Reveals a Novel and a Targetable Population of Macrophages in Idiopathic Pulmonary Fibrosis
E. A. Ayaub, S. Poli, J. Ng, T. S. Adams, J. C. Schupp, L. Quesada, F. Poli, C. Cosme, R. Matthew, J. Martinez, X. Liang, J. Villalba, J. A. Lederer, S. G. Chu, B. Raby, , I. Rosas
The paper identifies a novel, targetable macrophage population in idiopathic pulmonary fibrosis using single-cell RNA-seq, CyTOF, and flow cytometry.
bioRxiv · Jan 4, 2021 · PreprintCell Biology
Immunofocusing humoral immunity potentiates the functional efficacy of the AnAPN1 malaria transmission-blocking vaccine antigen
N. G. Bender, P. Khare, J. Martinez, R. E. Tweedell, V. O. Nyasembe, B. Lopez-Gutierrez, A. Tripathi, D. Miller, T. Hamerly, E. M. Vela, R. F. Howard, S. Nsango, R. R. Cobb, M. Harbers, R. R. Dinglasan
The paper evaluates a new malaria transmission-blocking vaccine antigen, UF6b, showing it induces potent antibodies against a key epitope and is immunogenic in mice.
bioRxiv · Nov 29, 2020Immunology
Global analysis of protein-RNA interactions in SARS-CoV-2 infected cells reveals key regulators of infection
W. Kamel, M. Noerenberg, B. Cerikan, H. Chen, A. I. Järvelin, M. Kammoun, J. Lee, N. Shuai, M. Garcia-Moreno, A. Andrejeva, M. J. Deery, C. J. Neufeldt, M. Cortese, M. L. Knight, K. S. Lilley, , A. Castello
The paper identifies key host and viral RNA-binding proteins involved in SARS-CoV-2 infection and shows that drugs targeting these proteins can inhibit infection.
bioRxiv · Nov 25, 2020Microbiology
Assembly defects of the human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia
S. Sekulovski, P. Devant, S. Panizza, T. Gogakos, A. Pitiriciu, K. Heitmeier, E. P. Ramsay, M. Barth, C. Schmidt, S. Weitzer, T. Tuschl, F. Baas, J. Martinez, S. Trowitzsch
This study shows that TSEN assembly defects in PCH patients impair pre-tRNA processing by reducing cleavage activity despite normal endonuclease activity.
bioRxiv · Aug 3, 2020Biochemistry
Development of a Synthetic Poxvirus-Based SARS-CoV-2 Vaccine
F. Chiuppesi, M. S. Werner, H. Contreras, H. V. Nguyen, J. Martinez, S. Park, J. Nguyen, M. Kha, A. Iniguez, Q. Zhou, T. Kaltcheva, R. Levytskyy, N. D. Ebelt, T. H. Kang, X. Wu, , F. Wussow
This paper develops a synthetic DNA-based vaccine platform to rapidly generate SARS-CoV-2 vaccines using recombinant MVA vectors expressing spike and nucleocapsid antigens, showing robust immune responses in mice.
bioRxiv · Jul 1, 2020 · PreprintImmunology
Dynamin-related Irgm proteins modulate LPS-induced caspase-4 activation and septic shock
R. Finethy, J. Dockterman, M. Kutsch, N. Orench-Rivera, G. Wallace, A. Piro, S. Luoma, A. Haldar, S. Hwang, J. Martinez, M. Kuehn, G. Taylor, J. Coers
This study identifies Irgm proteins as negative regulators of caspase-4 activation in response to LPS, showing their role in preventing septic shock.
bioRxiv · Mar 18, 2020Immunology
Non-canonical autophagy in dendritic cells restricts cross-presentation and anti-tumor immunity
P. Sil, G. W. Muse, S.-W. Wong, J. P. Kolb, L. M. DeGraff, C. J. Tucker, E. Scappini, A. G. Snyder, S. Grimm, A. Oberst, J. Martinez
This study shows that Rubicon deficiency in dendritic cells enhances cross-presentation and anti-tumor immunity by increasing phagosome-to-cytosol escape and antigen degradation.
bioRxiv · Oct 2, 2019 · PreprintImmunology
β-blockers augment L-type Ca2+ channel activity by target-selective spatially restricted β2AR-cAMP-PKA signaling in neurons
A. Shen, D. Chen, M. Kaur, B. Xu, Q. Shi, J. Martinez, K. N. M. Man, J. W. Hell, M. F. Navedo, X. Yu, Y. Xiang
This study shows β-blockers like carvedilol can activate β2AR at low concentrations, enhancing L-type Ca2+ channel activity in neurons through localized cAMP/PKA signaling.
bioRxiv · Jun 13, 2019Cell Biology
Addressing multiple sources of uncertainty in the estimation of parrot abundance from roost counts: a case study with the Vinaceous-breasted Parrot (Amazona vinacea)
V. Zulian, E. S. Müller, K. Cockle, A. Lesterhuis, R. Tomasi Junior, N. P. Prestes, J. Martinez, G. Ferraz
The paper improves abundance estimates for Vinaceous-breasted Parrots by addressing detection and sampling uncertainties using roost counts and statistical models.
bioRxiv · Oct 29, 2018Ecology