Author
Q. Zhang
University of Southern California
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2026 · peak 52/yrCo-Author Collaboration Network
10 top collaborators · 40 mutual co-author links192 papers
Recent·Most cited
- PathologyPharmacological ResearchPeer-reviewed
Repurposing Nintedanib for Pathological Cardiac Remodeling and Dysfunction
P. Umbarkar, A. P. Singh, S. Tousif…·H. Lal
This study shows that Nintedanib prevents cardiac fibrosis and dysfunction in a mouse model of heart failure, even after treatment interruption.
DOI 10.1016/j.phrs.2021.105605 - PhysiologybioRxivPreprint
Phytochemical Nrf2 activator attenuates skeletal muscle mitochondrial dysfunction and impaired proteostasis in a preclinical model of musculoskeletal aging
R. V. Musci, K. M. Andrie, M. A. Walsh…·K. L. Hamilton
This study shows that a Nrf2 activator improves mitochondrial function and proteostasis in aging guinea pigs but does not significantly enhance mobility.
DOI 10.1101/2021.06.11.448143 - Cell BiologybioRxivPreprint
Lysosome Lipid Signaling from the Periphery to Neurons Regulates Longevity
M. Savini, J. D. Duffy, A. Folick…·M. C. Wang
This study identifies a lysosomal lipid signaling pathway from fat to neurons in C. elegans that promotes longevity by regulating neuropeptide signaling.
DOI 10.1101/2021.06.10.447794 - MicrobiologybioRxiv
5-methylcytosine modification by Plasmodium NSUN2 stabilizes mRNA and mediates the development of gametocytes
M. Liu, G. Guo, P. Qian…·Q. Zhang
This study identifies m5C mRNA modifications mediated by Plasmodium NSUN2 as critical for transcript stability and gametocyte development in malaria parasites.
- ImmunologybioRxivPreprint
African swine fever virus structural protein p17 inhibits cGAS-STING signaling pathway through interacting with STING
W. Zheng, N. Xia, J. Luo…·J. Zhu
This study identifies p17 as a viral protein that inhibits the cGAS-STING pathway by interacting with STING and disrupting TBK1 and IKKε recruitment.
DOI 10.1101/2021.06.02.446854 - ImmunologybioRxiv
The African swine fever virus protease pS273R inhibits DNA sensing cGAS-STING pathway by targeting IKKε
J. Luo, J. Ni, S. Jiang…·J. Zhu
This study identifies pS273R as an ASFV protease that inhibits the cGAS-STING pathway by targeting IKKε, revealing a new immune evasion mechanism.
DOI 10.1080/21505594.2022.2065962 - BiophysicsbioRxivPreprint
Biofilm self-patterning: mechanical forces drive a reorientation cascade
J. Nijjer, C. Li, Q. Zhang…·J. Yan
This study shows that mechanical forces in Vibrio cholerae biofilms drive a reorientation cascade, creating a core-rim structure through differential growth and compressive stresses.
DOI 10.1101/2021.05.11.440221 - ImmunologybioRxiv
Stress granules are shock absorbers that prevent excessive innate immune responses to dsRNA
S. Hur, M. Paget, C. Cadena…·X. Mu
This study shows stress granules regulate immune responses to dsRNA by preventing excessive inflammation and viral replication.
DOI 10.1016/j.molcel.2023.03.010 - Evolutionary BiologybioRxivPreprint
Portrait of a genus: the genetic diversity of Zea
L. Chen, J. Luo, M. Jin…·J. Yan
This study maps genetic diversity across Zea species, identifying millions of variants and adaptive genes, and demonstrates their utility in breeding.
DOI 10.1101/2021.04.07.438828 - PaleontologybioRxivPreprint
Unbiased clade age estimation using a Bayesian Brownian Bridge
D. Silvestro, C. D. Bacon, W. Ding…·Y. Xing
The paper defends the Bayesian Brownian Bridge method against criticism, showing its estimates of angiosperm clade ages are valid despite concerns about fossil data scarcity and sampling bias.
DOI 10.1101/2021.04.03.438104 - Cell BiologybioRxivPreprint
The effect of histone deacetylase inhibitor Trichostatin A on IL-17A-induced transformation of MRC5 into myofibroblasts and its mechanism
q. Zhang, Z. Guo, J. Zhang…·J. Cao
This study investigates how Trichostatin A (TSA) affects IL-17A-induced transformation of MRC5 cells into myofibroblasts and identifies the TGF-β1/Smads signaling pathway as the mechanism.
DOI 10.1101/2021.03.31.437856 - Evolutionary BiologybioRxivPreprint
Transcriptome-based phylogeny and whole-genome duplication in Theaceae
Q. Zhang, L. Zhao, J.-L. Zhao…·X.-Q. Yu
This study uses transcriptomes and genome data to resolve phylogenetic relationships and detect whole-genome duplication in Theaceae, finding a WGD event and introgression events.
DOI 10.1101/2021.03.26.437128 - BioengineeringbioRxiv
Sub-second multi-channel magnetic control of select neural circuits in behaving flies
C. Sebesta, D. Torres Hinojosa, B. Wang…·J. T. Robinson
This study demonstrates sub-second, multichannel neural stimulation in flies using magnetic nanoparticles and temperature-sensitive ion channels, improving the temporal resolution of magnetogenetics.
DOI 10.1038/s41563-022-01281-7 - ImmunologybioRxivPreprint
Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19
M. G. P. van der Wijst, S. E. Vazquez, G. C. Hartoularos…·C. R. Langelier
The paper examines IFN-I autoantibodies in critical COVID-19 patients through longitudinal single-cell analysis, revealing suppressed ISG-I responses in myeloid cells.
- ImmunologybioRxivPreprint
SARS-CoV-2 variants resist antibody neutralization and broaden host ACE2 usage
R. Wang, Q. Zhang, J. Ge…·L. Zhang
This study evaluates antibody resistance and ACE2 usage in SARS-CoV-2 variants, finding SA501Y.V2 shows the highest resistance and expanded host range.
DOI 10.1101/2021.03.09.434497 - Evolutionary BiologybioRxiv
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
Z. Huang, I. Furo, V. Peona…·L. Xu
This study identifies recurrent chromosome fusions and gene losses in parrots, revealing the role of transposable elements and genetic drift in neo-sex chromosome evolution.
DOI 10.1038/s41467-022-28585-1 - Plant BiologybioRxivPreprint
A chloride efflux transporter OsBIRG1 regulates grain size and salt tolerance in rice
This study identifies BIRG1 as a chloride efflux transporter in rice that regulates grain size and salt tolerance by controlling chloride homeostasis.
DOI 10.1101/2021.03.07.434240 - MicrobiologybioRxivPreprint
Brucella outer membrane proteins to control maturation and antigen presentation of mouse dendritic cells
N. Yang, Z. Tong, c. chen…·Jinfeng Xu
This study examines how Brucella outer membrane proteins and mutants affect dendritic cell maturation and antigen presentation in mice, revealing their roles in immune evasion and pathogenesis.
DOI 10.1101/2021.03.05.434055 - BiochemistrybioRxiv
501Y.V2 and 501Y.V3 variants of SARS-CoV-2 lose binding to Bamlanivimab in vitro
H. Liu, P. Wei, Q. Zhang…·G. Zhang
The paper shows that the 501Y.V2 and 501Y.V3 SARS-CoV-2 variants have mutations that reduce binding to the antibody Bamlanivimab.
DOI 10.1080/19420862.2021.1919285 - BiochemistrybioRxivPreprint
Thiophosphopeptides Instantly Targeting Golgi Apparatus and Selectively Killing Cancer Cells
W. Tan, Q. Zhang, J. Wang…·B. Xu
The paper introduces thiophosphopeptides that target the Golgi apparatus and selectively kill cancer cells through enzymatic self-assembly.
DOI 10.1101/2021.02.13.431079 - Cancer BiologybioRxivPreprint
Hotspot ESR1 mutations are multimodal and contextual drivers of breast cancer metastasis
Z. Li, Y. Wu, M. E. Yates…·S. Oesterreich
This study identifies ESR1 mutations as drivers of breast cancer metastasis by altering cell adhesion and migration through genomic and transcriptomic reprogramming.
DOI 10.1101/2021.02.10.430701 - ImmunologybioRxivPreprint
Activin A correlates with the worst outcomes in COVID-19 patients, and can be induced by cytokines via the IKK/NF-kappa B pathway
M. McAleavy, Q. Zhang, J. Xu…·D. J. Glass
The paper shows elevated Activin A and FLRG levels in COVID-19 patients predict severe outcomes like mechanical ventilation and mortality.
DOI 10.1101/2021.02.04.429815 - MicrobiologyScientific ReportsPeer-reviewed
Binding Ability Prediction between Spike Protein and Human ACE2 Reveals the Adaptive Strategy of SARS-CoV-2 in Humans
The paper predicts the binding ability between SARS-CoV-2 spike protein and human ACE2, revealing adaptive mutations that enhance transmissibility in humans.
DOI 10.1038/s41598-021-82938-2 - BiochemistrybioRxiv
The basis of a more contagious 501Y.V1 variant of SARS-COV-2
G. Zhang, H. Liu, Q. Zhang…·P. Marrack
This paper investigates the increased transmissibility of the SARS-CoV-2 501Y.V1 variant due to the N501Y mutation in the Spike protein's RBD and its impact on ACE2 binding and vaccine efficacy.
DOI 10.1038/s41422-021-00496-8 - Plant BiologybioRxivPreprint
Environment-Dependent Switch between Two Immune Systems against Ralstonia solanacearum Infections in Pepper
S. Yang, W. Cai, L. Shen…·S. He
This study shows pepper activates two different immune systems against Ralstonia solanacearum under high temperature and humidity, regulated by CaWRKY40 and cytokinins.
DOI 10.1101/2021.01.14.426660 - BiophysicsbioRxivPreprint
Inhibitor Binding Modulates Protonation States in the Active Site of SARS-CoV-2 Main Protease
D. W. Kneller, G. Phillips, K. L. Weiss…·A. Kovalevsky
This study uses neutron crystallography to show that inhibitor binding changes protonation states of three histidine residues in SARS-CoV-2 Mpro, providing insights for drug design.
DOI 10.1101/2021.01.12.426388 - Cell BiologybioRxivPreprint
FGF2 disruption enhances thermogenesis in brown and beige fat to protect against obesity and hepatic steatosis
H. Li, X. Zhang, C. Huang…·H. Lin
This study shows that disrupting FGF2 enhances thermogenesis in brown and beige fat, reducing obesity and hepatic steatosis in mice.
DOI 10.1101/2020.12.02.407650 - BiophysicsBiophysical JournalPeer-reviewed
Coordination between E. coli Cell Size and Cell Cycle Mediated by DnaA
This paper develops a kinetic model of DnaA regulation in E. coli to explain how cell size and cell cycle are coordinated, reproducing experimental results and predicting responses to perturbations.
DOI 10.1016/j.bpj.2020.10.034 - BiophysicsJournal of Structural BiologyPeer-reviewed
Statistics of spatial rotations in 3D electron cryo-microscopy by unit quaternion description
M. Hu, Q. Zhang, J. Yang, X. Li
This paper develops statistical tools for analyzing spatial rotations in 3D cryoEM using unit quaternions to enable comparisons, interpolations, and inference of rotations.
DOI 10.1016/j.jsb.2020.107601