Author
Y. Shen
The Ohio State University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2026 · peak 31/yrCo-Author Collaboration Network
10 top collaborators · 19 mutual co-author links113 papers
Recent·Most cited
- MicrobiologybioRxivDOI 10.1128/jb.00136-21
- Cancer BiologybioRxivPreprint
macroH2A2 shapes chromatin accessibility at enhancer elements in glioblastoma to modulate a targetable self-renewal epigenetic network
A. Nikolic, A. Bobyn, F. Maule…·M. Gallo
This study identifies macroH2A2 as a regulator of chromatin accessibility at enhancers in glioblastoma, showing that inhibiting Menin increases macroH2A2 and represses self-renewal.
- MicrobiologybioRxiv
Archaeal extracellular vesicles are produced in an ESCRT-dependent manner and promote gene transfer and nutrient cycling in extreme environments
J. Liu, V. Cvirkaite-Krupovic, P.-H. Commere…·M. Krupovic
This study shows archaeal extracellular vesicles, produced via ESCRT machinery, transfer DNA and support nutrient cycling in extreme environments.
DOI 10.1038/s41396-021-00984-0 - BioengineeringbioRxivPreprint
Reconciling Inherent Interfacial Compatibility Conflict Enhances Adhesive Infiltration and Resolves Dentin Bonding Durability
This paper identifies interfacial compatibility conflict as the cause of poor dentin bonding durability and shows that hydrophobizing the demineralized dentin matrix enhances adhesive infiltration and bonding strength.
DOI 10.1101/2021.02.09.430396 - Evolutionary BiologybioRxivPreprint
A Human Accelerated Region is a Leydig cell GLI2 Enhancer that Affects Male-Typical Behavior
J. Reiter, A. R. Norman, N. R. Ahituv…·S. Thomas
The paper identifies a human accelerated region (HAR) that functions as a Leydig cell enhancer for Gli2, affecting male-typical behavior in mice.
DOI 10.1101/2021.01.27.428524 - Cell BiologybioRxiv
Human stem cell model of HNF1A deficiency shows uncoupled insulin to C-peptide secretion with accumulation of abnormal insulin granules
B. J. Gonzalez, H. Zhao, J. Niu…·D. Egli
This study uses human stem cells to show that HNF1A deficiency leads to impaired insulin secretion, altered insulin:C-peptide ratios, and abnormal secretory granules in beta-cells.
- Cell BiologybioRxiv
Methylation of Dual Specificity Phosphatase 4 Controls Cell Differentiation
H. Su, M. Jiang, C. Senevirathne…·X. Zhao
This study identifies PRMT1-mediated methylation of DUSP4 as a regulator of p38 MAPK activity, influencing megakaryocyte differentiation and thrombocytopenia in myelodysplastic syndromes.
DOI 10.1016/j.celrep.2021.109421 - Plant BiologybioRxiv
A Systematic and Consistent Assay for High-throughput Characterization of Stalk Quality in Sugarcane by Near-infrared Spectroscopy
M. Wang, Y. Shen, X. Li…·M. Zhang
This study develops a high-throughput method using near-infrared spectroscopy to assess sugarcane stalk quality, achieving high prediction accuracy with RPD values up to 6.3.
DOI 10.1186/s13007-021-00777-8 - BiophysicsbioRxivPreprint
Construction of a liquid-liquid phase separation system from the gel-sol transition of elongated protein microgels in a crowding agent
Y. Xu, R. Qi, H. Zhu…·T. Knowles
This study constructs a liquid-liquid phase separation system through a gel-sol transition of elongated protein microgels in a crowding agent, enabling tunable and monitorable models for drug release applications.
DOI 10.1101/2020.12.08.416867 - BiochemistrybioRxivPreprint
A First-in-class, Highly Selective and Cell-active AllostericInhibitor of Protein Arginine Methyltransferase 6 (PRMT6)
Y. Shen, F. Li, M. Szewczyk…·J. Jin
This paper reports the discovery of a first-in-class, highly selective allosteric inhibitor of PRMT6, SGC6870, with potent activity and selectivity in vitro and in cells.
DOI 10.1101/2020.12.04.412569 - ImmunologybioRxiv
Circulating ACE2-expressing Exosomes Block SARS-CoV-2 Virus Infection as an Innate Antiviral Mechanism
L. El-Shennawy, A. D. Hoffmann, N. K. Dashzeveg…·H. Liu
The paper shows that ACE2-expressing exosomes in plasma block SARS-CoV-2 infection by competing with cellular ACE2, offering a new innate antiviral mechanism.
DOI 10.1038/s41467-021-27893-2 - BiochemistrybioRxiv
Kinetic sequencing (k-Seq) as a massively parallel assay for ribozyme kinetics: utility and critical parameters
Y. Shen, A. D. Pressman, E. Janzen, I. A. Chen
The paper evaluates the k-Seq method for measuring ribozyme kinetics, identifying factors affecting accuracy and proposing guidelines to improve data quality.
DOI 10.1093/nar/gkab199 - MicrobiologybioRxivPreprint
Bacillus subtilis YngB contributes to wall teichoic acid glucosylation and glycolipid formation during anaerobic growth
C.-H. Wu, J. Rismondo, R. M. L. Morgan…·A. Grundling
This study identifies YngB as a UGPase in B. subtilis that contributes to WTA glucosylation and glycolipid formation under anaerobic conditions.
DOI 10.1101/2020.11.30.405621 - BiophysicsbioRxiv
Absolute measurement of cellular activities using photochromic single-fluorophore biosensors
V. Gielen, V. Mönkemöller, F. Bierbuesse…·P. Dedecker
The paper introduces PEAQ biosensing, a method using photochromic single-fluorophore biosensors to measure absolute analyte concentrations or activities in live cells.
DOI 10.1038/s41467-022-29508-w - BiochemistrybioRxivPreprint
Fast and easy single-molecule pulldown assay based on agarose microbeads
Q. ZHAO, Y. SHEN, X. LI…·P. HUANG
This paper introduces a simplified agarose microbead-based SiMPull method that is faster, easier, and more reproducible than the original technique while maintaining similar sensitivity and signal-to-noise ratio.
DOI 10.1101/2020.09.20.305177 - BioengineeringbioRxivPreprint
Effects of Healthy Aging on Right Ventricular Structure and Biomechanical Properties
D. Sharifi Kia, Y. Shen, T. N. Bachman…·M. A. Simon
This study examines how healthy aging affects right ventricular structure and biomechanical properties in rats, finding increased peak pressures, wall thickness, and fiber reorientation.
- ImmunologybioRxiv
Human T-bet governs innate and innate-like adaptive IFN-γ immunity against mycobacteria
R. Yang, F. Mele, L. Worley…·L. H Glimcher
This study identifies T-bet deficiency as a cause of mycobacterial disease by impairing IFN-γ production in innate and innate-like adaptive lymphocytes.
DOI 10.1016/j.cell.2020.10.046 - EcologybioRxiv
Spatially Explicit Modeling of Community Occupancy using Markov Random Field Models with Imperfect Observation: Mesocarnivores in Apostle Islands National Lakeshore
Y. Shen, E. Olson, T. R. Van Deelen
The paper develops a spatially explicit community occupancy model using Markov random fields to analyze mesocarnivore distributions in Apostle Islands, finding that source-sink dynamics better explain species partitioning than competition.
DOI 10.1016/j.ecolmodel.2021.109712 - Pharmacology & ToxicologybioRxiv
Interleukin-22 mediated renal metabolic reprogramming via PFKFB3 to treat kidney injury
W. Chen, Y. Shen, J. Fan…·D. Ju
This study identifies IL-22's role in renal metabolic reprogramming through PFKFB3 to treat kidney injury in animal models.
DOI 10.1002/ctm2.324 - BiophysicsNature NanotechnologyPeer-reviewed
Biomolecular condensates undergo a generic shear-mediated liquid-to-solid transition
Y. Shen, F. S. Ruggeri, D. Vigolo…·T. Knowles
The paper shows that protein condensates undergo a liquid-to-solid transition under mechanical shear, revealing hydrogen bonding as a key factor.
DOI 10.1038/s41565-020-0731-4 - MicrobiologybioRxivPreprint
Pathogenicity, tissue tropism and potential vertical transmission of SARSr-CoV-2 in Malayan pangolins
Y. Shen, W. Chen, E. C. Holmes
This study examines SARSr-CoV-2 in Malayan pangolins, showing lung infection, vertical transmission, and immune response similarities to COVID-19 in humans.
DOI 10.1101/2020.06.22.164442 - Plant BiologybioRxivPreprint
The genome assembly and annotation of Magnolia biondii Pamp., a phylogenetically, economically, and medicinally important ornamental tree species
S. Dong, M. Liu, Y. Liu…·S. Zhang
This paper presents a chromosome-level genome assembly and annotation of Magnolia biondii, revealing insights into its evolutionary history and gene function.
DOI 10.1101/2020.06.17.158428 - Cancer BiologybioRxivPreprint
Immune Selection Pressure Contributes to Pancreatic Cancer Immune Evasion
R. Ajina, A. Zuo, S. Wang…·L. M. Weiner
This study shows immune selection pressure in pancreatic cancer drives myeloid mimicry and immune evasion, which can be counteracted by JAK/STAT pathway inhibition to enhance immunotherapy.
DOI 10.1101/2020.06.15.151274 - BiochemistrybioRxivPreprint
Direct RNA sequencing reveals structural differences between transcript isoforms
A. J. G. Aw, S. Lim, J. X. Wang…·Y. Wan
This study introduces PORE-cupine, a method combining structure probing and nanopore sequencing to detect RNA secondary structures, revealing isoform-specific structural differences and their impact on translation efficiency.
DOI 10.1101/2020.06.11.147223 - BiophysicsbioRxiv
Molecular basis for recognition of Listeria cell wall teichoic acid by the pseudo-symmetric SH3b-like repeats of a bacteriophage endolysin
Y. Shen, I. Kalograiaki, A. Prunotto…·L. J. Martin
The paper describes the atomic-level interaction between a bacteriophage endolysin's CBD500 domain and Listeria cell wall teichoic acid, identifying key epitopes and binding mechanisms.
DOI 10.1039/d0sc04394j - BiochemistrybioRxivPreprint
Structural basis of bile acid receptor activation and Gs coupling
F. Yang, C. Mao, L. Guo…·Y. Zhang
The paper reports cryo-EM structures of GPBAR-Gs complexes, revealing structural features of bile acid recognition, allosteric effects, and biased signaling.
DOI 10.1101/2020.05.24.104034 - Cell BiologyJournal of Synchrotron RadiationPeer-reviewed
Quantitative three-dimensional nondestructive imaging of whole anaerobic ammonium-oxidizing bacteria
M.-W. Peng, Y. Guan, J.-H. Liu…·F. Fang
This study uses synchrotron soft X-ray nano-computed tomography to quantitatively image the 3D ultrastructure of intact anammox bacteria and explores their shape adaptation to Fe2+.
DOI 10.1107/s1600577520002349