Author
J. Wang
Brigham and Women's Hospital
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2022-2022 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 11 mutual co-author links712 papers
Recent·Most cited
- BiochemistrybioRxiv
Chiral Derivatization-enabled Discrimination and Visualization of Proteinogenic Amino Acids by Ion Mobility Mass Spectrometry
C. Xie, Y. Chen, X. Wang…·Z. Cai
This paper develops a method using chiral derivatization and TIMS-MS to separate and visualize 19 pairs of chiral amino acids in complex biological samples.
DOI 10.1039/d2sc03604e - BiophysicsbioRxivPreprint
Global quantitative understanding of nonequilibrium cell fate decision making in response to pheromone
S. Li, Q. Liu, E. Wang, J. Wang
This study quantitatively maps yeast cell fate decisions in response to pheromone by integrating experimental observations with theoretical models and stochastic simulations.
DOI 10.1101/2022.07.04.498707 - Evolutionary BiologybioRxiv
Genomic signals of local adaptation and hybridization in Asian white birch
G. Nocchi, J. Wang, L. Yang…·N. Wang
This study analyzes genomic diversity in Asian white birch to identify signals of adaptation and hybridization, finding 7,609 SNPs associated with environmental variables and highlighting climate change risks.
DOI 10.1111/mec.16788 - ImmunologybioRxivPreprint
Identification of a Broadly Fibrogenic Macrophage Subset Induced by Type 3 Inflammation in Human and Murine Liver and Lung Fibrosis
T. Fabre, A. M. S. Barron, S. M. Christensen…·K. Dower
The paper identifies a fibrogenic macrophage subset linked to liver and lung fibrosis across species and shows that targeting specific cytokines reduces fibrosis in models.
- PathologybioRxivPreprint
CircRNA-regulated immune response of Asian honey bee workers to microsporidian infection
Z. Zhu, J. Wang, X. Fan…·R. Guo
This study identifies circRNAs in Asian honey bee midguts infected with Nosema ceranae and shows their role in regulating immune responses through miRNA targeting and pathway involvement.
DOI 10.1101/2022.06.30.498258 - ImmunologybioRxiv
Vitamin D and the ability to produce 1,25(OH)2D are critical for protection from viral infection of the lungs.
J. Arora, D. R. Patel, M. J. Nicol…·M. T.-A. Cantorna
This study shows that vitamin D deficiency worsens lung inflammation during H1N1 and SARS-CoV-2 infections, while sufficient vitamin D reduces inflammation, though not viral replication.
- ImmunologybioRxiv
Identification and Mechanistic Basis of non-ACE2 Blocking Neutralizing Antibodies from COVID-19 Patients with Deep RNA Sequencing and Molecular Dynamics Simulations
A. M. Fredericks, K. W. East, Y. Shi…·S. F. Monaghan
The paper identifies non-ACE2 blocking neutralizing antibodies in COVID-19 patients using deep RNA sequencing and molecular dynamics simulations, showing their potential for personalized therapy.
DOI 10.3389/fmolb.2022.1080964 - Plant BiologybioRxivPreprint
AIM1-dependent high basal SA accumulation modulates stomatal aperture in rice
L. Xu, H. Zhao, J. Wang…·K. Yi
This study identifies OsAIM1 as essential for high basal SA levels in rice, which regulate stomatal aperture and shoot temperature.
DOI 10.1101/2022.06.23.497111 - BiochemistrybioRxiv
α-Synuclein Aggregation is Triggered by Amyloid-β Oligomers via Heterogeneous Primary Nucleation
D. M. Vadukul, M. Papp, R. J. Thrush…·F. A. Aprile
This study shows that soluble amyloid-β oligomers trigger α-synuclein aggregation via heterogeneous primary nucleation, forming fibrils with α-synuclein cores and associated amyloid-β.
DOI 10.1021/jacs.3c03212 - Plant BiologybioRxiv
Oligomerisation of a plant helper NLR requires cell-surface and intracellular immune receptor activation
J. M. Feehan, J. Wang, X. Sun…·J. D. Jones
This study shows that helper NLR NRG1 forms oligomeric complexes with EDS1 and SAG101 at the plasma membrane upon co-activation of intracellular and cell surface receptors.
DOI 10.1073/pnas.2210406120 - EcologybioRxivPreprint
Combined transcriptome and metabolome analysis of a new species of microalgae from Tibetan plateau and its response to sewage treatment
J. Wang, Q. Zhang, J. Chen…·D. Bu
This study combines transcriptome and metabolome analysis to identify molecular responses of Desmodesmus sp. to sewage treatment, revealing key pathways and metabolite changes.
DOI 10.1101/2022.06.16.496493 - BiophysicsbioRxiv
Single TolC-AcrA complex formation monitoredby time dependent single-channel electrophysiology
M. Winterhalter, I. V. Bodrenko, T. A. Zewdie…·S. Witt
The paper uses single-channel electrophysiology to monitor TolC-AcrA complex formation and assesses inhibitor interactions through current and noise analysis.
DOI 10.1016/j.biochi.2023.01.004 - Cell BiologybioRxiv
A small H2O-soluble ingredient of royal jelly lower cholesterol levels in liver cells by suppressing squalene epoxidase
C. Wang, Z.-y. Jiang, J. Wang…·X.-m. Meng
This study identifies a water-soluble fraction of royal jelly that reduces squalene epoxidase expression in liver cells, thereby lowering cholesterol levels.
DOI 10.1016/j.heliyon.2022.e12286 - BiophysicsbioRxivPreprint
Beyond the circuit architecture: attractor dynamics reveals the mechanism of improved performance in decision-making and working memory
The paper uses a non-equilibrium landscape and flux approach to analyze a biophysically based model of decision-making and working memory, revealing trade-offs and mechanisms for improved performance.
DOI 10.1101/2022.06.11.495775 - Plant BiologybioRxivPreprint
The trifecta of disease avoidance, silique shattering resistance and flowering period elongation achieved by the BnaIDA editing in Brassica napus
R. Geng, Y. Shan, L. Li…·X.-L. Tan
This study edits two IDA homologues in Brassica napus to prevent petal shedding, enhance silique shattering resistance, and extend flowering period, without affecting agronomic traits.
DOI 10.1101/2022.06.09.493885 - BiochemistrybioRxivPreprint
A Modular Chemoenzymatic Approach to C14-Functionalized Steroids
F. Song, M. Zheng, J. Wang…·X. Qu
This paper develops a modular chemoenzymatic method to synthesize diverse C14-functionalized steroids using a novel CYP14A enzyme and its variants.
DOI 10.1101/2022.06.08.495276 - ImmunologybioRxivPreprint
Regulation of protein translation by TRIM21
H. Li, S. Liu, Q. Feng…·H. Zhu
This study identifies TRIM21 as a regulator of PKR-mediated protein translation by modulating PP1 ubiquitination and eIF2 dephosphorylation, revealing its role in antiviral defense and potential therapeutic applications.
DOI 10.1101/2022.06.07.495079 - Plant BiologybioRxivPreprint
Population Transcriptome and Phenotype Reveal that Rht-D1b Contributes a Larger Seedling Root to Modern Bread Wheat
X. Wang, P. Zhao, X. Shi…·S. Xu
The paper investigates the impact of GR alleles on wheat root systems, finding that Rht-D1b increases seedling root size by enhancing cell length and meristem size, while Rht-B1b has no significant effect on root traits.
DOI 10.1101/2022.06.02.494553 - BiophysicsbioRxiv
Topological defects govern mesenchymal condensations, offering a morphology-based tool to predict cartilage differentiation
E. Makhija, Y. Zheng, J. Wang…·K. J. Van Vliet
The paper shows that topological defects in cellular swirl patterns predict cartilage differentiation potential of mesenchymal stromal cells.
- Cancer BiologybioRxiv
The evolution of two transmissible cancers in Tasmanian devils
M. R. Stammnitz, K. Gori, Y. M. Kwon…·E. P. Murchison
This study analyzes the genetic diversity and evolution of two transmissible cancers in Tasmanian devils, revealing their emergence dates, mutation rates, and evolutionary patterns.
DOI 10.1126/science.abq6453 - ImmunologybioRxiv
The leucine-rich repeat (LRR) domain of NLRP3 is required for NLRP3 inflammasome activation in macrophages
Y. Duan, J. Wang, J. Cai…·Y. He
This study shows that the LRR domain of NLRP3 is essential for its inflammasome activation in macrophages by enabling self-association, oligomerization, and interaction with NEK7.
DOI 10.1016/j.jbc.2022.102717 - MicrobiologybioRxivPreprint
Sex differences in the nasal microbiome of healthy young adults
Y. Ju, Z. Zhang, M. Liu…·R. Guo
This study analyzes the nasal microbiome of healthy young adults, revealing sex-specific differences in composition and ecological stability between males and females.
DOI 10.1101/2022.05.23.493011 - BioengineeringbioRxiv
Adaptation-proof SARS-CoV-2 vaccine design
Y. L. Vishweshwaraiah, B. Hnath, B. Rackley…·N. V. Dokholyan
This study designs SARS-CoV-2 vaccines targeting conserved spike protein regions to reduce mutation escape, using epitope grafting on diverse scaffolds and showing immune response and diagnostic utility.
DOI 10.1002/adfm.202206055 - Cancer BiologybioRxivPreprint
Transcriptome profile and clinical characterization of ICOS expression in brain gliomas
This study examines ICOS expression in gliomas using transcriptome data and clinical information, finding it correlates with malignancy, immune response, and poor prognosis.
DOI 10.1101/2022.05.17.492394 - Cancer BiologybioRxivPreprint
Ultra-small bispecific fusion protein augments tumor penetration and treatment efficacy for pancreatic cancer
Q. Wang, J. Wang, H. Yan…·X. Zhao
This paper develops an ultra-small bispecific fusion protein, Bi-fp50, that improves tumor penetration and treatment efficacy for pancreatic cancer by targeting EGFR and VEGF.
DOI 10.1101/2022.05.17.492287 - Evolutionary BiologybioRxiv
Long divergent haplotypes introgressed from wild sheep are associated with distinct morphological and adaptive characteristics in domestic sheep
H. Cheng, Z. Zhang, J. Wen…·Y. Jiang
This study identifies introgressed haplotypes from wild sheep species associated with morphological traits in domestic sheep using whole-genome sequencing.
DOI 10.1371/journal.pgen.1010615 - ImmunologybioRxivPreprint
The Clinical Response of Upadacitinib and Risankizumab is Associated with Reduced Inflammatory Bowel Disease Anti-TNFα Inadequate Response Mechanisms
J. Wang, M. Macoritto, H. Guay…·X. Cao
This study identifies TNF-IR up-regulated and down-regulated modules in IBD patients and shows that upadacitinib and risankizumab reduce TNF-IR up-regulated mechanisms in JAK1 responders.
DOI 10.1101/2022.05.16.492167 - Pharmacology & ToxicologybioRxiv
Toxic effects of elevated bile acid levels on fetal myocardium in intrahepatic cholestasis of pregnancy?from a neonatal perspective
The paper investigates the toxic effects of elevated maternal bile acid levels on fetal myocardium in intrahepatic cholestasis of pregnancy, finding that neonatal cardiac parameters correlate with maternal bile acid levels but show recovery in older neonates.
DOI 10.1016/j.clinre.2022.102013 - BiophysicsbioRxivPreprint
Predicting 3D RNA structure from solely the nucleotide sequence using Euclidean distance neural networks
C. M. Sha, J. Wang, N. V. Dokholyan
This paper introduces a neural network that predicts 3D RNA structure from sequence using Euclidean distance matrices, achieving high accuracy and speed.
DOI 10.1101/2022.05.16.492153