Author
Z. Liu
Karolinska InstitutetPrimary ORCID profile (0009-0003-3836-7377 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2017-2025 · peak 78/yrCo-Author Collaboration Network
10 top collaborators · 38 mutual co-author links301 papers
Recent·Most cited
- MicrobiologybioRxivPreprintDOI 10.1101/2022.09.28.510023
- Cell BiologybioRxivPreprint
Separate roles of LMAN1 and MCFD2 in ER-to-Golgi trafficking of factor V and factor VIII
This study investigates the distinct roles of LMAN1 and MCFD2 in ER-to-Golgi trafficking of factor V and factor VIII, revealing that MCFD2 binds cargo and LMAN1 acts as a shuttling carrier.
DOI 10.1101/2022.09.25.509417 - BiochemistrybioRxivPreprint
Study on the interactions between cisplatin and cadherin
X. Wang, J. Sun, K.- Shao…·Z. Liu
This study investigates the interactions between cisplatin and E-cadherin using fluorescence spectroscopy and AFM, revealing strong binding and structural changes.
DOI 10.1101/2022.09.11.507507 - Evolutionary BiologybioRxiv
Dynamics of bacterial recombination in the human gut microbiome
The paper quantifies recombination rates and patterns in the human gut microbiome using sequenced fecal samples, revealing heterogeneities and the role of natural selection in variant spread.
DOI 10.1371/journal.pbio.3002472 - Cancer BiologybioRxiv
Kinase Suppressor of RAS 1 (KSR1) maintains the transformed phenotype of BRAFV600E mutant human melanoma cells
Z. Liu, A. Krstic, A. Neve…·W. Kolch
This study shows that KSR1 is essential for maintaining the transformed phenotype of BRAFV600E mutant melanoma cells by promoting cell survival and inhibiting senescence and apoptosis.
DOI 10.3390/ijms241411821 - ImmunologybioRxivPreprint
Spike-specific CXCR3+ TFH cells play a dominant functional role in supporting antibody responses in SARS-CoV-2 infection and vaccination
J. Zhang, R. He, B. Liu…·X. Qu
This study identifies spike-specific CXCR3+ TFH cells as key drivers of long-term antibody responses in SARS-CoV-2 infection and vaccination.
DOI 10.1101/2022.08.09.503302 - BiophysicsbioRxiv
Sensitive and Selective Polymer Condensation at Membrane Surface Driven by Positive Co-operativity
The paper shows that positive co-operativity between membrane phase separation and surface polymer reorganization drives sensitive and selective condensate formation.
DOI 10.1073/pnas.2212516120 - Plant BiologybioRxivPreprint
Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule symbiosis establishment
Z. Liu, X. Kong, Y. Long…·Z. Yan
The paper integrates single-nucleus and spatial transcriptomics to map transitional states in soybean nodule symbiosis, identifying functionally distinct cell subgroups and a transitional infected cell subtype.
DOI 10.1101/2022.06.30.498286 - Cancer BiologybioRxivPreprint
IFNA pathway drives the more aggressive phenotype of KRASG12D-mutant pancreatic ductal adenocarcinomas via IFNAR1/STAT3 activation
D. G. Duda, K. Inoue, D. H. Schanne…·N. Bardeesy
The paper shows that the IFNA pathway promotes aggressive KRASG12D-mutant pancreatic ductal adenocarcinomas through IFNAR1/STAT3 activation and identifies IFNAR1 inhibition as a potential therapeutic strategy.
- ImmunologybioRxivPreprint
Inflammasome targeting with an NLRP3 agonist therapy is feasible but ineffective in murine hepatocellular carcinoma models with liver damage
Z. Pu, Z. Liu, J. Chen…·D. G. Duda
This study tests an NLRP3 agonist added to PD-1/VEGFR inhibitors in murine HCC models with liver damage, finding it feasible but ineffective in improving tumor outcomes.
DOI 10.1101/2022.06.23.497362 - BioengineeringbioRxiv
Simultaneous multifunctional transcriptome engineering by CRISPR RNA scaffold
Z. Liu, P. Robson, A. W. Cheng
This paper introduces CREST, a CRISPR-based platform that enables simultaneous RNA modulation functions, reducing off-target effects and expanding transcriptome engineering capabilities.
DOI 10.1093/nar/gkad547 - Cancer BiologybioRxiv
HCP5 prevents ubiquitination-mediated UTP3 degradation to inhibit apoptosis by activating c-Myc transcriptional activity
This study identifies HCP5 as a key antiapoptotic factor in ESCC by preventing UTP3 degradation and activating c-Myc to suppress apoptosis.
DOI 10.1016/j.ymthe.2022.10.006 - ImmunologybioRxiv
CSF1R-dependent macrophages in the salivary gland are essential for epithelial regeneration following radiation-induced injury
J. G. McKendrick, G.-R. Jones, S. S. Elder…·E. Emmerson
This study identifies CSF1R-dependent macrophages as critical for epithelial regeneration after radiation-induced salivary gland injury.
- MicrobiologybioRxiv
SARS-CoV-2 requires acidic pH to infect cells
A. J. B. Kreutzberger, A. Sanyal, A. Saminathan…·T. Kirchhausen
This study shows SARS-CoV-2 requires acidic pH for membrane fusion and genome release, even after proteolytic cleavage by furin or TMPRSS2.
DOI 10.1073/pnas.2209514119 - Plant BiologybioRxivPreprint
Population Transcriptome and Phenotype Reveal that Rht-D1b Contributes a Larger Seedling Root to Modern Bread Wheat
X. Wang, P. Zhao, X. Shi…·S. Xu
The paper investigates the impact of GR alleles on wheat root systems, finding that Rht-D1b increases seedling root size by enhancing cell length and meristem size, while Rht-B1b has no significant effect on root traits.
DOI 10.1101/2022.06.02.494553 - Plant BiologyPlant PhysiologyPeer-reviewed
Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation
Z. Liu, S. Hartman, H. van Veen…·R. Sasidharan
This study shows ethylene improves root hypoxia tolerance by reducing reactive oxygen species and inducing growth cessation in Arabidopsis thaliana.
DOI 10.1093/plphys/kiac245 - PathologybioRxivPreprint
Spatially Resolved Metabolites in Stable and Vulnerable Human Atherosclerotic Plaques Identified by Mass Spectrometry Imaging
E. H. Seeley, Z. Liu, S. Yuan…·A. Yurdagul
This study identifies spatially resolved metabolite differences between stable and unstable human atherosclerotic plaques using mass spectrometry imaging and RNA-seq integration.
DOI 10.1101/2022.05.30.494038 - ImmunologybioRxiv
CspZ FH-binding sites as epitopes promote antibody-mediated Lyme borreliae clearance
Y.-L. Chen, A. L. Marcinkiewicz, T. A. Nowak…·Y.-P. Lin
The paper shows that antibodies targeting CspZ FH-binding sites effectively clear Lyme borreliae in vitro and in vivo, highlighting their importance for vaccine development.
DOI 10.1128/iai.00062-22 - Cancer BiologybioRxivPreprint
A "cooperative collaboration" between HAND2 and MYCN shapes neuroblastoma cell identity
M. Xu, M. Sun, X. Zhang…·Z. Liu
This study identifies a cooperative interaction between HAND2 and MYCN in neuroblastoma that regulates enhancer binding and gene transcription, and shows that targeting these factors suppresses tumor growth.
DOI 10.1101/2022.05.18.492511 - Animal Behavior & CognitionbioRxivPreprint
Intermittent fasting mitigates cognitive deficits in Alzheimer's disease via the gut-brain axis
M. Jia, L. Shi, Y. Zhao…·Z. Liu
This study shows intermittent fasting improves cognitive function in Alzheimer's mice by reducing Aβ and neuroinflammation, and through gut microbiota and metabolite changes.
DOI 10.1101/2022.05.11.491466 - BiochemistrybioRxiv
Specific binding of Hsp27 and phosphorylated Tau mitigates abnormal Tau aggregation-induced pathology
S. Zhang, Y. Zhu, J. Lu…·D. Li
This study shows Hsp27 binds phosphorylated Tau to prevent its aggregation and mitigate AD pathology.
DOI 10.7554/elife.79898 - ImmunologybioRxiv
Imprinted antibody responses against SARS-CoV-2 Omicron sublineages
Y.-J. Park, D. Pinto, A. C. Walls…·Piccoli
This study shows that hybrid immunity and vaccine boosters provide potent neutralizing activity against Omicron BA.1 and BA.2, while breakthrough infections induce nasal mucosal neutralization and identify an ultrapotent pan-variant antibody.
DOI 10.1126/science.adc9127 - BiochemistrybioRxiv
Deep mutational scanning and machine learning reveal structural and molecular rules governing allosteric hotspots in homologous proteins
M. Leander, Z. Liu, Q. Cui, S. Raman
The paper identifies allosteric hotspots in bacterial transcription factors using deep mutational scanning and machine learning, finding that structural and dynamic properties are key predictors.
DOI 10.7554/elife.79932 - Cell BiologyNaturePeer-reviewed
Cell transcriptomic atlas of the non-human primate Macaca fascicularis
L. Han, X. Wei, C. Liu…·Z. Liu
The paper presents a single-cell transcriptomic atlas of Macaca fascicularis, identifying cell interactions and disease associations.
DOI 10.1038/s41586-022-04587-3 - Plant BiologybioRxivPreprint
Identification of two bZIP transcription factors that regulate development of pavement and trichome cells in Arabidopsis thaliana by single-cell RNA-sequencing
R. Wu, Z. Liu, J. Wang…·X. Sun
This study identifies bZIP25 and bZIP53 as transcription factors regulating pavement and trichome cell development in Arabidopsis thaliana using single-cell RNA-sequencing.
DOI 10.1101/2022.04.12.488054 - Plant BiologybioRxivPreprint
Electron tomography analysis of the prolamellar body and its transformation into grana thylakoids in the cryofixed Arabidopsis cotyledon
Z. Liang, W.-T. Yeung, K. K. Mai…·B.-H. Kang
This study uses electron tomography to analyze the structural transformation of prolamellar bodies into grana thylakoids in Arabidopsis cotyledons and identifies the role of CURT1 proteins in this process.
DOI 10.1101/2022.04.04.487035 - ImmunologybioRxiv
A novel anti-PD-L1/IL-15 immunocytokine overcomes resistance to PD-L1 blockade and elicits potent antitumor immunity
This study develops an immunocytokine (LH01) combining anti-PD-L1 and IL-15 to enhance antitumor immunity and overcome resistance to PD-L1 blockade in mouse models.
DOI 10.1016/j.ymthe.2022.08.016 - Pharmacology & ToxicologybioRxivPreprint
Effect of GDF15 on acetaminophen (APAP)-induced liver injury in mice
P. Jiang, Z. Liu, T. Fang…·J. Weng
This study investigates the role of GDF15 in APAP-induced liver injury in mice, finding no significant ameliorative effect from overexpression or supplementation of GDF15.
DOI 10.1101/2022.03.13.484113