Author
D. Wang
Primary ORCID profile (0000-0002-2440-3045 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2017-2024 · peak 50/yrCo-Author Collaboration Network
10 top collaborators · 29 mutual co-author links219 papers
Recent·Most cited
- Cancer BiologybioRxivPreprintDOI 10.1101/2022.08.03.502666
- BiophysicsbioRxivPreprint
Synergizing exchangeable fluorophore labels for multi-target STED microscopy
M. Glogger, D. Wang, J. Kompa…·M. Heileman
This paper demonstrates 6-target STED microscopy using exchangeable labels, improving multiplexing capabilities and reducing photobleaching in live-cell imaging.
DOI 10.1101/2022.07.02.498450 - Plant BiologybioRxivPreprint
A point mutation in Chl biosynthesis gene Mg-chelatase I subunit influences on leaf color and metabolism in strawberry
J. Feng, Y. Ma, J. Shi…·Y. Wen
This study identifies a point mutation in the CHLI gene of strawberry that affects leaf color and metabolism by reducing chlorophyll and flavonoid levels and altering light sensitivity.
DOI 10.1101/2022.06.30.498292 - Pharmacology & ToxicologybioRxiv
A Long-Circulating Vector for Aptamers Based upon Polyphosphodiester-Backboned Molecular Brushes
Y. Wang, D. Wang, J. Lin…·K. Zhang
This paper develops a long-circulating molecular brush to enhance aptamer stability and bioactivity in vivo.
DOI 10.1002/anie.202204576 - MicrobiologybioRxivPreprint
On-target inhibition of Cryptosporidium parvum by nitazoxanide (NTZ) and paclitaxel (PTX) validated using a novel MDR1-transgenic host cell model and algorithms to quantify on/off-target rates
B. Yang, Y. Yan, D. Wang…·G. Zhu
The paper validates on-target and off-target effects of anti-Cryptosporidium drugs using a novel MDR1-transgenic host cell model and algorithms to quantify drug action contributions.
DOI 10.1101/2022.06.19.496759 - MicrobiologybioRxivPreprint
A library of promoter-gfp fusion reporters for studying systemic expression pattern of cyclic-di-GMP metabolism-related genes in Pseudomonas aeruginosa
D. Liu, D. Wang, Q. Wei…·L. Z. Ma
The paper constructs a promoter-GFP fusion reporter library to study the systemic expression patterns of 41 c-di-GMP metabolism-related genes in Pseudomonas aeruginosa under various growth conditions.
DOI 10.1101/2022.06.15.496363 - BioengineeringbioRxiv
A Mechanistic Study on the Cellular Uptake, Intracellular Trafficking, and Antisense Gene Regulation of Bottlebrush Polymer-Conjugated Oligonucleotides
L. Zhang, Y. Wang, P. Chen…·K. Zhang
This paper investigates the cellular uptake, trafficking, and antisense gene regulation mechanisms of bottlebrush polymer-conjugated oligonucleotides in cancer cells.
DOI 10.1039/d2cb00149g - ImmunologybioRxiv
Protective human anti-poxvirus monoclonal antibodies are generated from rare memory B cells isolated by multicolor antigen tetramers
X. Gu, Y. Zhang, W. Jiang…·M. Fang
The paper isolates rare memory B cells from vaccinated individuals to generate anti-poxvirus monoclonal antibodies, identifying one with high efficacy against viral infection.
DOI 10.3390/vaccines10071084 - BiophysicsbioRxivPreprint
AlphaFold2-RAVE: From sequence to Boltzmann ensemble
B. P. Vani, A. Aranganathan, D. Wang, P. Tiwary
AlphaFold2-RAVE generates thermodynamically ranked conformational ensembles using AlphaFold2 structures as initializations for AI-enhanced molecular dynamics simulations.
DOI 10.1101/2022.05.25.493365 - MicrobiologybioRxiv
A toxin-mediated policing system in Bacillus improves population fitness via penalizing non-cooperating phenotypic cheaters
R. Huang, J. Shao, Z. Xu…·R. Zhang
This study identifies a toxin-mediated policing system in Bacillus that punishes phenotypic cheaters, enhancing population fitness in plant rhizosphere and under stress.
DOI 10.7554/elife.84743 - MicrobiologybioRxivPreprint
The highly conserved stem-loop II motif is important for the lifecycle of astroviruses but dispensable for SARS-CoV-2
A. B. Janowski, H. Jiang, C. Fujii…·D. Wang
This study shows the stem-loop II motif is critical for astrovirus replication but not for SARS-CoV-2.
DOI 10.1101/2022.04.30.486882 - Cell BiologybioRxivPreprint
Placental mammal derived microRNAs alter pathways in the endometrial epithelia important for endometrial function.
L. Hume, J. C. Edge, H. Tinning…·N. Forde
This study identifies placental mammal-specific miRNAs and their targets in endometrial epithelial cells, showing their role in implantation and potential involvement in recurrent pregnancy loss.
DOI 10.1101/2022.04.23.489270 - MicrobiologybioRxivPreprint
HIV-linked gut dysbiosis associates with cytokine production capacity in viral-suppressed people living with HIV
Y. Zhang, S. Andreu-Sanchez, N. Vadaq…·J. Fu
This study links HIV-associated gut dysbiosis to cytokine production capacity in ART-suppressed PLHIV, identifying specific microbial strains associated with immune markers.
DOI 10.1101/2022.04.21.489050 - BiophysicsbioRxivPreprint
Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.1 and BA.2 variants and their mouse origins
This study investigates the structural and biochemical features of Omicron BA.1 and BA.2 variants, showing increased infectivity and mouse ACE2 binding compared to wildtype, suggesting a potential human-cat-mouse-human transmission cycle.
- ImmunologybioRxivPreprint
Selective IL13Rα2-Targeted Functionality of IL13-Ligand CARs is Enhanced by Inclusion of 4-1BB Co-Stimulation
R. Starr, X. Yang, B. Aguilar…·C. E. Brown
This study compares IL13-ligand CAR designs to determine how co-stimulation domains affect tumor selectivity and anti-tumor activity against glioblastoma.
- MicrobiologybioRxiv
Prevalence of Bourbon and Heartland viruses in field collected ticks at an environmental field station in St. Louis County, Missouri, USA
I. D. Aziati, D. McFarland, A. Antia…·A. Boon
The study assesses the prevalence of Bourbon and Heartland viruses in ticks at an environmental field station, finding 3.9% and 7.6% positivity rates respectively.
DOI 10.1016/j.ttbdis.2022.102080 - BiochemistrybioRxiv
Live-cell RNA imaging with metabolically incorporated fluorescent nucleosides
D. Wang, A. Shalamberidze, A. E. Arguello…·R. E. Kleiner
This paper develops a method for live-cell RNA imaging using fluorescent nucleosides and shows accelerated RNA turnover and distinct RNA granules during oxidative stress.
DOI 10.1021/jacs.2c04142 - Pharmacology & ToxicologybioRxivPreprint
Effect of GDF15 on acetaminophen (APAP)-induced liver injury in mice
P. Jiang, Z. Liu, T. Fang…·J. Weng
This study investigates the role of GDF15 in APAP-induced liver injury in mice, finding no significant ameliorative effect from overexpression or supplementation of GDF15.
DOI 10.1101/2022.03.13.484113 - BiophysicsbioRxivPreprint
Spatiotemporally Mapping Thermodynamics of Lysosomes and Mitochondria using Cascade Organelle-Targeting Upconversion Nanoparticles
Q. P. Su, X. Di, D. Wang…·D. Jin
This paper develops temperature-sensitive nanothermometry probes to measure spatiotemporal thermodynamics of lysosomes and mitochondria in living cells, revealing distinct thermal responses to metabolic perturbations.
- Cancer BiologybioRxivPreprint
Arbidol inhibits esophageal squamous cell carcinoma growth in vitro and in vivo through suppressing ataxia telangiectasia and Rad3-related protein kinase
K. Liu, Z. Dong, N. Yang…·B. Yuan
This study shows Arbidol inhibits esophageal squamous cell carcinoma growth by targeting the ATR kinase and disrupting the DNA replication pathway.
DOI 10.1101/2022.02.15.480509 - BiophysicsbioRxivPreprint
Toward Atomistic Models of Intact SARS-CoV-2 via Martini Coarse-Grained Molecular Dynamics Simulations
D. Wang, J. Li, L. Wang…·C. Song
This study constructs multiscale models of SARS-CoV-2 using coarse-grained molecular dynamics simulations and experimental data, revealing dynamic behavior of membrane proteins and lipid interactions.
DOI 10.1101/2022.01.31.478415 - MicrobiologybioRxivPreprint
Construction of a potent pan-vaccine based on the evolutionary tendency of SARS-CoV-2 spike protein.
Y. Zhao, W. Ni, S. Liang…·K. Lan
This study constructs a pan-vaccine (S6) based on the evolutionary patterns of SARS-CoV-2 spike protein to combat diverse variants, showing broader neutralization than existing vaccines.
DOI 10.1101/2021.12.21.473594 - PhysiologybioRxivPreprint
Insulin exposed endometrial epithelial cells cultured in a microfluidic device alters transcripts involved in translation that may contribute to reduced implantation capacity of the endometrium.
S. Y. Baik, H. Tinning, D. Wang, N. Forde
This study examines how insulin affects endometrial transcript expression in a microfluidic model, identifying altered translation-related transcripts that may reduce endometrial implantation capacity.
DOI 10.1101/2021.12.15.472777 - MicrobiologybioRxivPreprint
HBV enveloped particle secretion is positively regulated by GRP78 through direct interaction with preS1
Y. Shi, X. Jin, S. Wu…·D. Wang
This study identifies GRP78 as a positive regulator of HBV enveloped-particle secretion through direct interaction with preS1, suggesting it as a potential therapeutic target.
- BiochemistryScientific ReportsPeer-reviewed
N-glycosylation profiles of the SARS-CoV-2 spike D614G mutant and its ancestral protein characterized by advanced mass spectrometry
D. Wang, B. Zhou, T. Keppel…·J. R. Barr
This study compares N-glycosylation profiles of SARS-CoV-2 spike proteins with D614G mutation and ancestral form using mass spectrometry, finding changes in glycan distribution and complexity.
DOI 10.1038/s41598-021-02904-w - ImmunologybioRxivPreprint
DEAD-box RNA helicase 18 disrupts IRF3-binding to the interferon-β promoter
S. Xiao, X. Xiao, M. Wang…·L. Fang
This study identifies DDX18 as a negative regulator of IRF3 binding to the IFN-β promoter, suppressing type I IFN production during viral infection.
DOI 10.1101/2021.10.26.465893 - Evolutionary BiologybioRxivPreprint
Who takes care of the kids at when? Sex differences in avian parental care
D. Wang, W. Zhang, X.-Y. L. Richter
The paper examines sex differences in avian parental care across species, finding that care roles vary and are influenced by factors like sexual selection and paternity certainty.
DOI 10.1101/2021.10.20.465177 - Plant BiologybioRxiv
OsMADS58 stabilizes gene regulatory circuits during rice stamen development
S.-N. Bai, L. Shen, F. Tian…·Z. Xu
This study identifies OsMADS58's role in stabilizing gene regulatory circuits during rice stamen development using CRISPR knockout and transcriptomic analysis.
DOI 10.3390/plants11212899 - MicrobiologybioRxivPreprint
A unique genomic island-governed cannibalism in Bacillus enhanced biofilm formation through a novel regulation mechanism
R. Huang, Q. Li, D. Wang…·R. Zhang
This study identifies a novel cannibalism mechanism in Bacillus velezensis SQR9 mediated by bacillunoic acids, enhancing biofilm formation and interspecies competition through a two-component regulatory system.
DOI 10.1101/2021.10.04.462985