Author
J. Zhang
Northeastern University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2020-2020 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 23 mutual co-author links588 papers
Recent·Most cited
- Plant BiologybioRxivPreprint
Spike development inhibition in the ftin mutant is associated with multiple phenotypes and regulated by multiple biological pathways
Y.-S. Zheng, J. Zhang, C. Liu…·W. Liu
The paper investigates the ftin gene's role in wheat under cold stress, finding it inhibits spike development through multiple pathways and phenotypic changes.
DOI 10.1101/2020.10.13.338731 - ImmunologybioRxivPreprint
Single-dose intranasal administration of AdCOVID elicits systemic and mucosal immunity against SARS-CoV-2 in mice
R. G. King, A. Silva-Sanchez, J. N. Peel…·S. Roberts
This study shows that AdCOVID, an intranasal vaccine, induces both systemic and mucosal immunity against SARS-CoV-2 in mice.
DOI 10.1101/2020.10.10.331348 - PathologybioRxivPreprint
Effects of Milk Fat Globule Epidermal Growth Factor VIII On Age-Associated Arterial Elastolysis, Fibrosis, and Calcification
S. H. Kim, L. Liu, L. Ni…·M. Wang
This study investigates how MFG-E8 signaling contributes to age-related arterial damage, showing that its deficiency reduces elastolysis, fibrosis, and calcification in mice.
- Plant BiologybioRxiv
Increased wheat protein content via introgression of a HMW glutenin selectively reshapes the grain proteome
H. Cao, O. Duncan, S. Islam…·A. H. Millar
Introgression of the 1Ay21* HMW-GS increases wheat grain protein content and improves bread-making quality by reshaping the grain proteome network.
DOI 10.1016/j.mcpro.2021.100097 - MicrobiologybioRxivPreprint
Comparative analysis of temporal transcriptome reveals the relationship between pectin degradation and pathogenicity of defoliating Verticillium dahliae to Upland cotton (Gossypium hirsutum)
F. Zhang, J. Zhang, W. Chen…·S. Zhu
This study compares the temporal transcriptomes of two Verticillium dahliae strains to identify pectin degradation genes linked to pathogenicity in Upland cotton.
DOI 10.1101/2020.10.02.323402 - Plant BiologybioRxiv
Genome-wide association study reveals the genetic architecture of 27 yield-related traits in tomato
J. Ye, X. Wang, W. Wang…·Z. Ye
This study identifies 129 loci associated with 27 yield-related traits in tomato, explaining 8.8% of phenotypic variance, and highlights a candidate gene involved in leaf stomata formation and drought resistance.
DOI 10.1093/plphys/kiab230 - ZoologybioRxiv
The role of cation diffusion facilitator CDF-1 in lipid metabolism in Caenorhabditis elegans
Y. Hu, J. Zhang, J. Sheng…·Y. Wen
This study identifies CDF-1 and SUR-7 as regulators of lipid metabolism in C. elegans, linking zinc homeostasis to lipid accumulation via the SREBP-SCD pathway.
DOI 10.1093/g3journal/jkab120 - MicrobiologyEmerging Microbes & InfectionsPeer-reviewed
Robust neutralization assay based on SARS-CoV-2 S-bearing vesicular stomatitis virus (VSV) pseudovirus and ACE2-overexpressed BHK21 cells
H. Xiong, Y. Wu, J. Cao…·N. Xia
This paper develops a robust neutralization assay using SARS-CoV-2 S-bearing VSV pseudovirus and ACE2-overexpressed BHK21 cells to screen antibodies and quantify neutralizing titers.
DOI 10.1080/22221751.2020.1815589 - PhysiologybioRxivPreprint
IF1 connects obesity and insulin resistance through mitochondrial reprogramming in association with ANT2
Y. Wang, Y. Guan, J. Zhang…·J. Ye
This study shows that reduced IF1 in obesity leads to mitochondrial reprogramming through ANT2 downregulation, improving insulin sensitivity despite increased body weight on a high-fat diet.
DOI 10.1101/2020.09.24.311076 - ImmunologybioRxivPreprint
ATPIF1 inactivation promotes antitumor immunity through metabolic reprogramming of CD8+ T cells
G. Zhong, Y. Wang, J. Zhang…·J. Ye
This study shows that inactivating ATPIF1 enhances CD8+ T cell antitumor activity by reprogramming their metabolism, leading to better tumor suppression in mouse models.
- BioengineeringbioRxiv
SingleChannelNet: A Model for Automatic Sleep Stage Classification with Raw Single-Channel EEG
D. Zhou, G. Hu, J. Zhang…·F. Cong
SingleChannelNet is a deep learning model that automatically classifies sleep stages from raw single-channel EEG data, achieving high accuracy without hand-crafted features or multi-modality data.
DOI 10.1016/j.bspc.2022.103592 - MicrobiologybioRxiv
CVB3 VP1 interacts with MAT1 to inhibit cell proliferation by interfering with Cdk-activating kinase complex activity in CVB3-induced acute pancreatitis
H. Zhang, l. zeng, Q. Liu…·X. Huang
This study identifies CVB3 VP1 as an inhibitor of cell proliferation by disrupting MAT1 interaction with the CAK complex, thereby blocking CAK-CDK4/6-Rb signaling in pancreatic cells.
DOI 10.1371/journal.ppat.1008992 - EcologybioRxiv
Neonicotinoids stimulate H2-limited methane emission in Periplaneta americana through the regulation of gut bacterium community
H. Bao, H. Gao, J. Zhang…·Z. Liu
This study shows neonicotinoids increase methane emission in Periplaneta americana by altering gut bacteria to produce more hydrogen, which methanogens use to generate methane.
DOI 10.1016/j.envpol.2021.117237 - ImmunologybioRxivPreprint
Lymph flow directs rapid neutrophil positioning in the lymph node in infection
J. Xue, Y. Lin, D. Oo…·S. Liao
This study shows that lymph flow directs neutrophil migration in lymph nodes during infection by transporting chemokines, and impaired flow leads to persistent infection.
DOI 10.1101/2020.09.20.302075 - NeurosciencebioRxivPreprint
Differential effect of ethanol intoxication on peripheral markers of cerebral injury in murine blunt TBI
z. li, j. zhang, s. halbgebauer…·f. olde Heuvel
This study examines how ethanol intoxication affects blood-based biomarkers of cerebral injury in mice after traumatic brain injury, finding differential impacts on NSE and NFL levels.
DOI 10.1101/2020.09.18.303396 - EcologybioRxivPreprint
Response of land use change and ecosystem services based on different functional scenarios: Case study of Nanjing
Z. Wang, Y. Wang, J. Zhang…·Z. Zhou
The paper assesses the impact of different land-use scenarios on ecosystem services in Nanjing from 2000 to 2015, showing varying effects on carbon storage, habitat quality, and water yield.
DOI 10.1101/2020.09.07.285726 - Cancer BiologybioRxivPreprint
Resolving the spatial and cellular architecture of lung adenocarcinoma by multi-region single-cell sequencing
A. Sinjab, G. Han, W. Treekitkarnmongkol…·H. Kadara
This study uses multi-region single-cell sequencing to map the spatial and cellular architecture of early-stage lung adenocarcinoma, revealing geospatial lineage evolution and potential therapeutic targets.
- Cancer BiologybioRxiv
Single-cell Characterization of Acute Myeloid Leukemia and its Microenvironment Following PD-1 Blockade Based Therapy
H. A. Abbas, D. Hao, K. Tomczak…·A. Futreal
This study analyzes single-cell RNA and TCR profiles from AML patients before and after PD-1 blockade therapy to identify factors influencing response and resistance.
- Cancer BiologybioRxivPreprint
Post-EMT: Cadherin-11 mediates cancer hijacking fibroblasts
This study identifies cadherin-11 as a mediator of cancer cell hijacking of fibroblasts post-EMT, enhancing invasion and metastasis in solid tumors.
DOI 10.1101/729491 - Cancer BiologybioRxiv
Identification of novel alternative splicing events associated with tumorigenesis, protein modification, and immune microenvironment in early-onset gastric cancer
The paper identifies novel alternative splicing events in early-onset gastric cancer and links them to protein modification and immune microenvironment changes.
DOI 10.3389/fonc.2021.640272 - PathologybioRxivPreprint
SARS-CoV-2 Quasispecies provides insight into its genetic dynamics during infection
F. Sun, X. Wang, S. Tan…·G. Deng
The paper analyzes SARS-CoV-2 quasispecies structure using SMRT sequencing, revealing a One-King model with dominant and minor haplotypes and their evolutionary dynamics.
DOI 10.1101/2020.08.20.258376 - MicrobiologybioRxivPreprint
Intracellular accumulation and secretion of hydrophobin-enriched vesicles aid the rapid sporulation of molds
F. Cai, Z. Zhao, R. Gao…·I. Druzhinina
The paper investigates the role of hydrophobin-enriched vesicles in mold sporulation, showing their intracellular accumulation and secretion contribute to spore hydrophobicity and rapid sporulation.
DOI 10.1101/2020.08.18.255406 - Cell BiologybioRxiv
Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to construct pluripotency gene regulatory network
The paper shows that KDM3A and KDM3B, along with OCT4/SOX2, regulate H3K9 methylation to maintain pluripotency in porcine-induced pluripotent stem cells.
DOI 10.1096/fj.202100230r - MicrobiologybioRxiv
SARS-CoV-2 ORF9b Antagonizes Type I and III Interferons by Targeting Multiple Components of RIG-I/MDA-5-MAVS, TLR3-TRIF, and cGAS-STING Signaling Pathways
L. Han, M.-W. Zhuang, Y. Zheng…·C. Gao
This study identifies SARS-CoV-2 ORF9b as a viral protein that inhibits type I and III interferon responses by disrupting multiple innate antiviral signaling pathways.
DOI 10.1002/jmv.27050 - BioengineeringbioRxiv
3D Bioprinting of Graphene Oxide-Incorporated Cell-laden Bone Mimicking Scaffolds for Promoting Scaffold Fidelity, Osteogenic Differentiation and Mineralization
j. zhang, H. Eyisoylu, X.-H. Qin…·R. Muller
This study develops a graphene oxide-alginate-gelatin bioink for 3D bioprinting of bone-mimicking scaffolds that enhance scaffold fidelity, osteogenic differentiation, and mineralization.
- MicrobiologybioRxiv
SARS-CoV-2 manipulates the SR-B1-mediated HDL uptake pathway for its entry
C. Wei, L. Wan, Q. Yan…·H. Zhong
This study shows SARS-CoV-2 uses the SR-B1-mediated HDL uptake pathway alongside ACE2 for entry, and blocking this pathway inhibits infection.
DOI 10.1038/s42255-020-00324-0 - BioengineeringbioRxivPreprint
Histologically resolved spatial multi-omics of human oral squamous cell carcinoma
T. Chen, C. Cao, J. Zhang…·T. Li
This paper introduces a technique combining label-free histology with spatially resolved multi-omics to map gene expression and copy number alterations in human oral squamous cell carcinoma.
DOI 10.1101/121616 - MicrobiologybioRxiv
Gut microbial communities associated with phenotypically divergent populations of the striped stem borer Chilo suppressalis
H. Zhong, J. Chen, J. Zhang, F. Li
The paper examines gut microbial communities in phenotypically divergent populations of Chilo suppressalis, finding variations linked to diet and gut compartments.
DOI 10.1038/s41598-021-94395-y