Author
Y. Zhang
Beijing University of Technology
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2023-2023 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 18 mutual co-author links947 papers
Recent·Most cited
- BioengineeringbioRxivPreprint
Therapeutic immune cell engineering with an mRNA : AAV-Sleeping Beauty composite system
L. Ye, S. Z. Lam, L. Yang…·S. Chen
The paper introduces a composite gene delivery system called MAJESTIC for efficient and stable engineering of therapeutic immune cells, showing improved cell viability and transgene expression compared to existing methods.
DOI 10.1101/2023.03.14.532651 - BioengineeringbioRxiv
Single-shot 3D photoacoustic tomography using a single-element detector for ultrafast imaging of hemodynamics
Y. Zhang, P. Hu, L. Li…·L. Wang
This paper introduces a single-shot 3D photoacoustic tomography method using a single-element detector to enable ultrafast hemodynamics imaging in humans and small animals.
- Cancer BiologybioRxivPreprint
Immunogenetic metabolomics revealed key enzymes that modulate CAR-T metabolism and function
P. A. Renauer, J. J. Park, M. Bai…·S. Chen
The paper identifies ADA as a metabolic regulator that enhances CAR-T cell function and tumor clearance through improved metabolism and reduced exhaustion.
DOI 10.1101/2023.03.14.532663 - BiochemistrybioRxivPreprint
Urine proteomic characterization of active and recovered COVID-19 patients
This study characterizes urine proteomic changes in active and recovered COVID-19 patients, identifying persistent immune and metabolic alterations and potential biomarkers.
DOI 10.1101/2023.03.12.532269 - Cancer BiologybioRxivPreprint
Unraveling dynamically-encoded latent transcriptomic patterns in pancreatic cancer cells by topic modelling
Y. Zhang, M. Khalilitousi, Y. P. Park
This paper introduces a Bayesian topic model to analyze single-cell RNA-seq data and identifies dynamic gene programs in pancreatic cancer associated with prognosis and immune pathways.
- MicrobiologybioRxivPreprint
Degenerated CRISPRs widely regulate Cas expression to balance immunity and cost
The paper shows degenerated CRISPRs encode regulatory RNAs that autoregulate Cas protein expression, balancing immunity and host fitness costs.
DOI 10.1101/2023.03.10.532045 - MicrobiologybioRxivPreprint
Modification of social cheating facilitates the stabilization and chronic infection of polymorphic Pseudomonas aeruginosa population
K. Zhao, X. Yang, Q. Zeng…·X. Zhou
The paper shows that evolution in Pseudomonas aeruginosa populations selects for cheater mutants that modify social cooperation to stabilize chronic infections and reduce host immune response.
DOI 10.1101/2023.03.08.531804 - BiophysicsbioRxiv
Structural insights into the allosteric inhibition of P2X4 receptors
C. Shen, W. Cui, Y. Zhang…·M. Hattori
This study reports cryo-EM structures of zebrafish P2X4 receptors bound to antagonists, revealing ligand-dependent structural changes that explain subtype-specific allosteric inhibition.
- BiophysicsbioRxivPreprint
Conformational entropy of intrinsically disordered proteins bars intruders from biomolecular condensates
V. Grigorev, N. S. Wingreen, Y. Zhang
The paper shows that intrinsically disordered regions (IDRs) in biomolecular condensates exclude intruders via conformational entropy, with exclusion efficiency increasing with IDR concentration and intruder size.
DOI 10.1101/2023.03.03.531005 - Cell BiologybioRxiv
RNA scaffolds the Golgi ribbon by forming condensates with GM130
This study shows that GM130 and RNA form condensates that scaffold the Golgi ribbon, and disrupting this interaction disrupts ribbon structure.
DOI 10.1038/s41556-024-01447-2 - MicrobiologybioRxiv
Mass-immigration shapes the antibiotic resistome of wastewater treatment plants
L. Zhang, B. Adyari, L. Hou…·A. Hu
The paper monitors antibiotic resistance genes in wastewater treatment plants and finds that mass-immigration of bacteria and ARGs from upstream units shapes ARG communities, with stochastic processes dominating their assembly.
DOI 10.1016/j.scitotenv.2023.168193 - ImmunologybioRxivPreprint
Excessive apoptosis of naïve T cells resulting hyperactivation as a cause of mammalian aging
L. Wang, X. Zhang, H. Zhang…·B. Zhou
This study shows that excessive apoptosis in naïve T cells causes hyperactivation and accelerates aging in mice, suggesting T-cell changes are a cause of aging.
DOI 10.1101/2023.02.24.529806 - Plant BiologybioRxivPreprint
A regulatory circuit involving the NADH dehydrogenase-like complex balances C4 photosynthetic carbon flow and cellular redox in maize
Q. Zhang, S. Tian, G. Chen…·P. Wang
This study investigates the role of the NDH complex in maize by analyzing mutants, finding it regulates carbon flow and redox balance in C4 photosynthesis.
DOI 10.1101/2023.02.23.529632 - BiochemistrybioRxiv
Recognition and Cleavage of Human tRNA Methyltransferase TRMT1 by the SARS-CoV-2 Main Protease
A. D'Oliviera, X. Dai, S. Mottaghinia…·J. S. Mugridge
This study identifies TRMT1 as a target of SARS-CoV-2 Mpro, showing cleavage disrupts its tRNA methyltransferase activity and impacts host translation and oxidative stress response.
DOI 10.7554/elife.91168.3 - BiochemistrybioRxivPreprint
Effect of growing regions on morphological characteristics, protein nutrition, rumen degradation and molecular structures of various whole-plant silage corn cultivars
DOI 10.1101/2023.02.17.529020 - MicrobiologybioRxivPreprint
A novel order-level lineage of ammonia-oxidizing Thaumarchaeota is widespread in marine and terrestrial environments
Y. Zheng, B. Wang, P. Gao…·W. Qin
The paper identifies a new AOA order, Nitrosomirales, widespread in marine and terrestrial environments, showing metabolic versatility and horizontal gene transfer.
DOI 10.1101/2023.02.17.529030 - ImmunologybioRxiv
Comprehensive Multi-omics Analysis Reveals the Core Role of Glycerophospholipid Metabolism in Rheumatoid Arthritis Development
C. Jian, L. Wei, T. Wu…·F. Zeng
This study identifies glycerophospholipid metabolism as a key factor in rheumatoid arthritis development through multi-omics analysis of gut microbiota, metabolites, and gene expression.
DOI 10.1186/s13075-023-03208-2 - BiochemistrybioRxivPreprint
In vivo evaluation of the effect of sickle cell hemoglobin S, C and therapeutic transfusion on erythrocyte metabolism and cardiorenal dysfunction
A. D'Alessandro, M. Nouraie, Y. Zhang…·M. T. Gladwin
This study analyzes RBC metabolism in 587 SCD patients to compare Hb SS, SC, and transfused AA RBCs, finding genotype-specific metabolic changes linked to hemolysis and organ dysfunction.
DOI 10.1101/2023.02.13.528368 - Animal Behavior & CognitionbioRxivPreprint
MiR-302-Induced anti-aging neural stem cells enhance cognitive function and extend lifespan
Y. Li, J. Sun, Y. Zheng…·Y. Wang
This study reprograms human fibroblasts into anti-aging neural stem cells using miR-302a, which enhance cognitive function and extend lifespan in mice with Alzheimer's.
- ImmunologybioRxivPreprint
Neutralization of SARS-CoV-2 BQ.1.1 and XBB.1.5 by Breakthrough Infection Sera from Previous and Current Waves in China
X. Wang, S. Jiang, S. Jiang…·P. Wang
This study assesses neutralization of SARS-CoV-2 Omicron subvariants by sera from different vaccination and breakthrough infection cohorts, finding that BQ.1.1 and XBB.1.5 show strong neutralization evasion.
DOI 10.1101/2023.02.07.527406 - Cancer BiologybioRxiv
Mitochondrial metabolism in primary and metastatic human kidney cancers
D. Bezwada, R. J. DeBerardinis, N. P. Lesner…·V. Margulis
This study investigates mitochondrial metabolism in kidney cancers, finding that primary tumors have suppressed mitochondrial function while metastases show enhanced TCA cycle labeling.
DOI 10.1038/s41586-024-07812-3 - Cell BiologybioRxivPreprint
Exosomes derived from BMSCs with miR-124-3p inhibitor protects against LPS-induced endometritis through regulation of DUSP6, p-p65 and p-ERK
J. Wei, Y. Chen, S. Zheng…·S. Yu
This study shows that exosomes from BMSCs with miR-124-3p inhibitor reduce LPS-induced endometritis by modulating DUSP6, p-p65, and p-ERK.
DOI 10.1101/2023.02.02.526752 - PathologybioRxivPreprint
A maize lipid droplet-associated protein is modulated by a virus to promote viral multiplication and infection
S. Wang, S. Li, X. Wang…·Z. Fan
This study shows that rice black streaked dwarf virus recruits a maize lipid droplet-associated protein to regulate fatty acid metabolism, promoting viral multiplication and infection.
DOI 10.1101/2023.02.02.526882 - Evolutionary BiologyPLOS PathogensPeer-reviewed
Developing Wolbachia-based disease interventions for an extreme environment
P. A. Ross, S. Elfekih, S. Collier…·A. A. Hoffmann
This study evaluates Wolbachia strains in Saudi Arabian mosquitoes for dengue suppression in extreme environments, finding reduced heat tolerance and local adaptation effects.
DOI 10.1371/journal.ppat.1011117 - BiochemistrybioRxiv
Serial Capture Affinity Purification and Integrated Structural Modeling of the H3K4me3 Binding and DNA Damage Related WDR76:SPIN1 Complex
X. Liu, Y. Zhang, Z. Wen…·M. Washburn
The paper uses SCAP to isolate the WDR76:SPIN1 complex, identifies H3K4me3 binding, and shows its role in DNA damage response through structural modeling and interaction network analysis.
DOI 10.1073/pnas.2318601121 - MicrobiologybioRxivPreprint
A common tolerance mechanism of bacterial biofilms to antibiotics
Y. Zhang, Y. Cai, T. Wang, Q. Wu
This study identifies a common mechanism by which bacterial biofilms resist antibiotics through lipid metabolism activation that reduces drug penetration and increases glucose consumption.
DOI 10.1101/2023.01.30.526163 - BioengineeringbioRxivPreprint
Multifunctional ferromagnetic fiber robots for navigation, sensing, and treatment in minimally invasive surgery
Y. Zhang, X. Wu, R. A. Vadlamani…·X. Jia
This paper introduces multifunctional ferromagnetic fiber robots capable of navigation, sensing, and treatment in minimally invasive surgery, demonstrating their use in electrophysiology sensing and localized treatment.
- Evolutionary BiologybioRxivPreprint
Mitochondrial Genome Analysis and Phylogeny and Divergence Time Evaluation of the Strix aluco
Y. Wang, H. Zhan, X. Yang…·Wildlife Rescue Center of Leigong Mountain National Nature Reserve
This study reports the first complete mitochondrial genome of Strix aluco, identifies its divergence time, and links geographic and climatic factors to its speciation.
DOI 10.1101/2023.01.20.524943