Author
Y. Li
Children's Hospital of Philadelphia
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2022-2022 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 12 mutual co-author links698 papers
Recent·Most cited
- PathologybioRxiv
Intracellular reactive oxygen species (intraROS)-aided localized cell death contributing to immune responses against wheat powdery mildew pathogen
Y. Li, R. Roychowdhury, L. Govta…·T. Fahima
The paper quantifies intraROS and apoROS accumulation in wheat infected by Bgt, showing that intraROS contributes to localized cell death in NLR R gene lines, while unconventional R genes show reduced intraROS responses.
DOI 10.1094/phyto-07-22-0271-fi - BioengineeringbioRxivPreprint
Optical Metabolic Imaging Uncovers Sex- and Diet-dependent Lipid Changes in Aging Drosophila Brain
Y. Li, P. Chang, S. Sankaran…·L. Shi
This study uses optical metabolic imaging to show diet and sex influence lipid metabolism in aging Drosophila brains, revealing IIS pathway involvement.
DOI 10.1101/2022.10.01.510416 - Cancer BiologybioRxivPreprint
L1 retrotransposition is regulated post-transcriptionally In High-Grade Serous Ovarian Cancer
B. Pradhan, K. Zhang, Y. Li…·L. Kauppi
The paper investigates L1 retrotransposition in HGSC, finding that despite high L1 mRNA expression, only a third of tumors show somatic insertions, with variability in retrotransposition frequency and patterns.
DOI 10.1101/2022.09.27.509826 - BiophysicsbioRxivPreprint
Metabolic acids impact bone mineral maturation
Y. Li, R. Li, D. G. Reid…·M. Duer
This study investigates how metabolic acids like citrate and lactate influence the 3D architecture of bone mineral through synthetic apatite formation.
DOI 10.1101/2022.09.21.508894 - MicrobiologybioRxiv
Guild-level microbiome signature associated with COVID-19 severity and prognosis
M. Guo, G. Wu, Y. Tan…·L. Zhao
This paper identifies a microbiome guild-level signature associated with COVID-19 severity and prognosis using metagenomic analysis of fecal samples.
DOI 10.1128/mbio.03519-22 - MicrobiologybioRxivPreprint
A family of novel immune systems targets early infection of nucleus-forming jumbo phages
Y. Li, J. Guan, S. Hareendranath…·J. Bondy-Denomy
This study identifies a novel immune system, Juk, in Pseudomonas aeruginosa that targets jumbo phages by inhibiting early phage transcription, DNA replication, and nucleus assembly.
DOI 10.1101/2022.09.17.508391 - ImmunologybioRxivPreprint
Tumor suppressor p53 deficiency increases tumor immunogenicity through promoting IL33-mediated anti-tumor immune responses
Y. Li, D. S. Gao, L. Yi…·B. Lu
This study shows that p53 deficiency in tumors enhances immunogenicity by increasing IL-33, which improves response to PD-1 ICB therapy in a mouse model.
DOI 10.1101/2022.09.11.507505 - ImmunologybioRxivPreprint
Microglia protect fungi against copper starvation and promote brain infection
S. H. Mohamed, M. S. Fu, S. Hain…·R. A. Drummond
This study shows microglia support cryptococcal brain infections by hosting fungal growth and facilitating copper acquisition, and demonstrates that IFNγ can block this process.
DOI 10.1101/2022.09.07.506901 - ImmunologybioRxivPreprint
Chemoenzymatic Measurement of Cell-surface Glycan in Single-cell Multiomics: LacNAc as an Example
W. Yu, X. Zhao, A. S. Jalloh…·J. P. Li
The paper introduces a chemoenzymatic method to detect cell-surface glycan in single-cell multiomics, showing increased LacNAc in activated CD8+ T cells and its correlation with glycolytic activity.
- ImmunologybioRxivPreprint
Differences in anti-viral immune responses in individuals of Indian and European origin: relevance for the COVID-19 pandemic
B. Geckin, M. Zoodsma, G. Kilic…·M. G. Netea
The paper compares anti-viral immune responses between individuals of Indian and European origin, finding differences in chromatin accessibility and transcriptional responses to viral stimulation, which may explain variations in COVID-19 susceptibility.
DOI 10.1101/2022.08.30.505791 - Cancer BiologybioRxiv
Evolutionary states and trajectories characterized by distinct pathways stratify ovarian high-grade serous carcinoma patients
A. Lahtinen, K. Lavikka, Y. Li…·S. Hautaniemi
This study identifies three evolutionary states of ovarian high-grade serous carcinoma using whole-genome sequencing and links them to distinct therapeutic targets.
DOI 10.1016/j.ccell.2023.04.017 - Evolutionary BiologybioRxiv
Evolution of m6A related genes in insects and function of METTL3 in embryonic development of silkworm.
S. Liu, S. Jia, Y. Li…·H. Wang
This study investigates the evolutionary conservation of m6A-related genes in insects and identifies METTL3's role in silkworm embryonic development through functional analysis.
DOI 10.1111/imb.12832 - BiophysicsbioRxivPreprint
Active bulging promotes biofilm formation in a bacterial swarm
The paper identifies 'active bulging' as a process that promotes biofilm formation in bacterial swarms through liquid bulge formation and cell density manipulation.
DOI 10.1101/2022.08.25.500950 - Cell BiologybioRxivPreprint
ATF3 Preserves Skeletal Muscle Stem Cell Quiescence by Preventing Precocious Activation
S. Zhang, Y. Huang, F. Yang…·H. Wang
This study identifies ATF3 as a key regulator that preserves skeletal muscle stem cell quiescence by preventing premature activation and maintaining genome stability.
DOI 10.1101/2022.08.12.503549 - Evolutionary BiologybioRxiv
Prevalent regulation of GATA2/3 and MSX2 on endogenous retrovirus-derived regulatory elements in human trophoblast stem cells
C. Du, J. Jiang, Y. Li…·H. Fan
This study identifies GATA2/3 and MSX2 as key regulators of ERV-derived enhancers in human trophoblast stem cells, revealing their role in placental gene regulation.
- Evolutionary BiologybioRxiv
Why is Babesia not killed by artemisinin like Plasmodium?
W. Si, C. Fang, C. Liu…·J. Sun
This study compares Babesia and Plasmodium genomes and gene expression to explain why Babesia is not killed by artemisinin, finding differences in haem synthesis, iron utilization, and gene expression.
DOI 10.1186/s13071-023-05783-4 - Plant BiologybioRxivPreprint
Pathogen effector-associated nuclear-localization of RPW8.2 amplifies its expression to boost immunity in Arabidopsis
J.-h. Zhao, Y. Huang, H. Wang…·W.-M. Wang
The paper identifies a fungal effector that enhances RPW8.2 nuclear localization and transcription, boosting immunity in Arabidopsis against powdery mildew.
DOI 10.1101/2022.07.28.501905 - BioengineeringbioRxiv
Wireless Neuromodulation at Submillimeter Precision via a Microwave Split-Ring Resonator
J.-X. Cheng, C. Yang, C. Marar…·N. Zheng
This paper introduces a microwave split-ring resonator that enables submillimeter precision neuromodulation by enhancing microwave field localization and efficiency for inhibiting neurons.
DOI 10.1126/sciadv.ado5560 - ImmunologybioRxivPreprint
Monovalent and trivalent VSV-based COVID-19 vaccines elicit potent neutralizing antibodies and immunodominant CD8+ T cells against diverse SARS-CoV-2 variants
K. A. Parham, G. N. Kim, N. Saeedian…·R. M. Troyer
This study evaluates rVSV-based vaccines against SARS-CoV-2 variants, showing potent neutralizing antibodies and CD8+ T cell responses across multiple variants.
DOI 10.1101/2022.07.19.500626 - Cell BiologybioRxiv
Basal type I interferon signaling has only modest effects on neonatal and juvenile hematopoiesis
Y. Li, W. Yang, H. C. Wang…·J. A. Magee
This study shows that loss of type I interferon signaling in neonatal mice reduces immature blood progenitors but has minimal impact on postnatal hematopoiesis.
- BiophysicsbioRxivPreprint
Complexes of tubulin oligomers and tau form an intervening network cross-bridging microtubules into bundles
P. Kohl, C. Song, B. J. Fletcher…·C. R. Safinya
The paper identifies an intervening network of tubulin-tau complexes that cross-link microtubules into bundles, revealing a new role for tubulin in stabilizing MT fascicles and preventing tau leakage in neurodegeneration.
DOI 10.1101/2022.07.18.500499 - MicrobiologybioRxiv
Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system
R. Dazzoni, Y. Li, A. Lopez-Castilla…·N. Izadi-Pruneyre
The paper determines the structure of the PulL-PulM heterodimer in the T2SS assembly platform and proposes a model for its dynamic role in pseudopilus polymerization.
DOI 10.1016/j.str.2022.12.003 - BiochemistrybioRxivPreprint
Structural basis for the enhanced infectivity and immune evasion of Omicron subvariants
Y. Li, Y. Shen, Y. Zhang, R. Yan
This study reports cryo-EM structures of Omicron subvariant S proteins, revealing conformational differences linked to transmissibility and immune evasion.
DOI 10.1101/2022.07.13.499586 - MicrobiologybioRxivPreprint
Kynurenic acid promotes A1 to A2 astrocyte conversion against HIV-associated neurocognitive disorder
This study shows that kynurenic acid reduces A1 astrocyte activation and promotes A2 astrocyte formation, improving cognitive deficits in HIV-1 gp120 transgenic mice.
DOI 10.1101/2022.07.11.499523 - BiophysicsbioRxivPreprint
REST: A method for restoring signals and revealing individual macromolecule states in cryo-ET
H. Zhang, Y. Li, Y. Liu…·P. Zhu
REST is a deep learning method that restores cryo-ET density maps by denoising and compensating for missing wedge effects, enabling visualization of individual macromolecules.
DOI 10.1101/2022.07.11.499538 - Plant BiologybioRxivPreprint
Brassinosteroids signaling component SlBZR1 promotes fruit ripening in tomato
F. Meng, H. Liu, S. Hu…·Q. Wang
This study shows that brassinosteroids promote tomato fruit ripening by enhancing ethylene production and carotenoid accumulation through the SlBZR1 transcription factor.
DOI 10.1101/2022.07.11.499596 - BiochemistrybioRxivPreprint
Bioorthogonal in-cell Labeling and Profiling of N6-isopentenyladenosine (i6A) Modified RNA
S. Wang, Y. Li, H. Zhou…·R. Wang
The paper introduces a method to detect and analyze i6A-modified RNA with single-base resolution using iodine-mediated oxidation and reverse transcription.
DOI 10.1101/2022.07.07.496599