Author
D. Wang
Primary ORCID profile (0000-0002-2440-3045 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Same name, identified by ORCID
Biology Disciplines
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2017-2024 · peak 50/yrCo-Author Collaboration Network
10 top collaborators · 29 mutual co-author links219 papers
Recent·Most cited
- Cancer BiologybioRxivDOI 10.1016/j.canlet.2021.05.011
- MicrobiologybioRxiv
Pilot study: Trehalose-induced remodelling of the human microbiota affects Clostridioides difficile infection outcome in an in vitro colonic model
A. Buckley, I. Moura, N. Arai…·M. H. Wilcox
This study shows that trehalose supplementation remodels the human gut microbiota, preventing simulated Clostridioides difficile infection in an in vitro model.
DOI 10.3389/fcimb.2021.670935 - Animal Behavior & CognitionbioRxivPreprint
Machine learning reveals cryptic dialects that guide mate choice in a songbird
D. Wang, W. Forstmeier, D. Farine…·B. Kempenaers
This study uses machine learning to uncover hidden song dialects in zebra finches that influence mate choice, showing cultural transmission drives assortative mating.
DOI 10.1101/2021.02.08.430277 - ImmunologybioRxiv
Th17 immunity in the colon is controlled by two novel subsets of colon-specific mononuclear phagocytes
H.-I. Huang, M. L. Jewell, N. Youssef…·G. E. Hammer
This study identifies two novel colon-specific mononuclear phagocyte subsets that are critical for Th17 immunity in the colon.
DOI 10.3389/fimmu.2021.661290 - BiophysicsbioRxiv
Membrane contact probability: an essential and predictive character for the structural and functional studies of membrane proteins
L. Wang, J. Zhang, D. Wang, C. Song
The paper introduces membrane contact probability (MCP) as a predictive metric for membrane proteins, showing it improves contact map and structure predictions.
DOI 10.1371/journal.pcbi.1009972 - BioengineeringbioRxivPreprint
Combined Enhanced Biological Phosphorus Removal (EBPR) and Nitrite Accumulation for Treating High-strength Wastewater
Z. Yuan, D. Kang, G. Li…·A. Z. Gu
This study combines enhanced biological phosphorus removal with nitrite accumulation in a reactor treating synthetic digested manure wastewater, achieving high phosphorus removal and stable nitrite levels.
DOI 10.1101/2021.01.16.426983 - BiochemistrybioRxiv
Isothermal Amplification of Nucleic Acids with Ladder-shape Melting Curve
D. Wang, Y. Wang, M. Zhang…·Y. Liu
The paper develops a novel isothermal amplification method (LMCP) for detecting Oryza sativa ITS with higher sensitivity and speed compared to LAMP.
DOI 10.2144/btn-2020-0173 - MicrobiologybioRxivPreprint
Generation of a SARS-CoV-2 Replicon as a Model System to Dissect Virus Replication and Antiviral Inhibition
X. He, S. Quan, M. Xu…·D. Wang
The paper develops a non-infectious SARS-CoV-2 replicon system to study viral replication and test antiviral compounds, revealing cell-line-specific inhibitor potencies.
DOI 10.1101/2020.12.12.422532 - Cell BiologybioRxiv
Quantitatively Monitoring in situ Mitochondrial Thermal Dynamics by Upconversion Nanoparticles
X. Di, D. Wang, J. Zhou…·Q. P. Su
This study develops upconversion nanoparticles to monitor mitochondrial temperature dynamics in living cells and shows distinct thermal responses to various stimuli.
- Evolutionary BiologybioRxivPreprint
Continuous cis-regulatory changes in an advantageous gene are linked with adaptive radiation in cichlid fishes
The paper identifies cis-regulatory changes in a gene linked to adaptive radiation in cichlid fishes by showing their impact on gene expression patterns across lineages.
DOI 10.1101/2020.11.28.391342 - MicrobiologybioRxiv
Modeling Versatile and Dynamic Anaerobic Metabolism for PAOs/GAOs Competition Using Agent-based Model and Verification via Single Cell Raman Micro-spectroscopy
G. Li, N. B. Tooker, D. Wang…·A. Z. Gu
This study develops and validates an improved EBPR model (iEBPR) to simulate PAO-GAO competition under extended anaerobic conditions using single-cell Raman micro-spectroscopy data.
DOI 10.1016/j.watres.2023.120540 - Cancer BiologybioRxivPreprint
CPEB2 m6A Methylation Regulates BTB Permeability via Affecting Splicing Factor SRSF5 Stability
m. zhang, c. yang, x. liu…·Y. XUE
This study identifies a regulatory pathway involving CPEB2 m6A methylation that affects BTB permeability through SRSF5 and P51-ETS1, enhancing drug efficacy in glioma treatment.
DOI 10.1101/2020.11.17.387928 - PathologybioRxiv
Allantoin induces pruritus by activating MrgprD in chronic kidney disease
Z. Tang, y. yang, y. sun…·X. Dong
This study shows allantoin induces pruritus in CKD by activating MrgprD and TRPV1 in DRG neurons.
DOI 10.1002/jcp.30977 - MicrobiologybioRxiv
Efficient long-range conduction in cable bacteria through nickel protein wires
H. T. S. Boschker, P. L. M. Cook, L. Polerecky…·F. J. R. Meysman
This study identifies nickel-ligated proteins as the conductive core of cable bacteria's periplasmic wires, revealing a novel mechanism for long-range electron transport.
DOI 10.1038/s41467-021-24312-4 - BioengineeringbioRxivPreprint
Fast 3D printing of large-scale biocompatible hydrogel models
N. Anandakrishnan, H. Ye, Z. Guo…·R. Zhao
This paper introduces a fast 3D printing method called FLOAT to create large-scale biocompatible hydrogel models with minimal deformation and cellular injury.
DOI 10.1101/2020.10.22.345660 - MicrobiologybioRxiv
Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs
This study uses TRACE-seq to analyze single throat swabs, integrating SARS-CoV-2 genome, microbiome, antibiotic resistance, and host response data.
DOI 10.1038/s41421-021-00248-3 - Plant BiologybioRxiv
Auxin guides germ cell specification in Arabidopsis anthers
Y. Zheng, D. Wang, S. Ye…·F. Zhao
This study shows auxin guides germ cell specification in Arabidopsis anthers by creating a centripetal gradient that is essential for GC initiation and patterning.
DOI 10.1073/pnas.2101492118 - Cancer BiologybioRxiv
Targeting the SHP2 phosphatase promotes vascular damage and inhibition of tumor growth
Y. Wang, O. Salvucci, H. Ohnuki…·G. Tosato
This study shows that inhibiting SHP2 in endothelial cells reduces tumor growth by damaging the tumor vasculature, independent of SHP2 effects in tumor cells.
DOI 10.15252/emmm.202114089 - MicrobiologybioRxiv
Control of ss-glucan exposure by the endo-1,3-glucanase Eng1 in Candida albicans modulates virulence
M. Yang, N. Solis, M. Marshall…·H. Liu
This study shows that Eng1 and Ywp1 in C. albicans reduce Dectin-1 binding by masking β-glucans, thereby decreasing immune recognition and virulence.
DOI 10.1371/journal.ppat.1010192 - Cell BiologybioRxiv
mRNA translation control by Dhx36 binding to 5' UTR G-quadruplex structures is essential for skeletal muscle stem cell regenerative functions
X. Chen, J. Yuan, G. Xue…·H. Wang
This study identifies Dhx36 as essential for skeletal muscle stem cell regeneration by regulating mRNA translation through binding and unwinding 5' UTR G-quadruplex structures.
DOI 10.1038/s41467-021-25170-w - PathologyNature CommunicationsPeer-reviewed
Clinically applicable histopathological diagnosis system for gastric cancer detection using deep learning
Z. Song, S. Zou, W. Zhou…·H. Shi
This paper develops a deep learning system for gastric cancer detection using histopathological images, achieving high sensitivity and robust performance across different scanners.
- Cancer BiologybioRxivPreprint
MicroRNA-224 Promotes Cell Migration and Invasion by Targeting HOXA5 expression in Hepatocellular Carcinoma
Y. Liu, C. Lin, D. Wang…·D. Feng
This study shows miR-224 promotes HCC cell migration and invasion by targeting HOXA5 and ADAM17, suggesting it as a potential therapeutic target.
DOI 10.1101/2020.08.27.269654 - Cancer BiologybioRxivPreprint
A targetable epigenetic vulnerability in PI3K/AKT inhibitor resistant cancers
H. Huang, D. Wu, Y. Yan…·S. Ren
This study identifies an epigenetic vulnerability in PI3K/AKT inhibitor-resistant cancers, showing that targeting bromodomain or HDAC inhibitors can overcome resistance by modulating histone acetylation at growth factor/receptor gene loci.
- Cancer BiologybioRxiv
Cyclin G2 inhibits oral squamous cell carcinoma growth and metastasis by binding to insulin-like growth factor binding protein 3 and regulating the FAK-SRC-STAT signaling pathway
DOI 10.3389/fonc.2020.560572 - Plant BiologybioRxivPreprint
A genomic link in China roses: and they all lived prickly but water deficient ever after?
M.-C. Zhong, X.-D. Jiang, G.-Q. Yang…·J.-Y. Hu
The paper identifies genetic elements and QTL associated with stem prickle development in roses, linking prickle density to water-related adaptations.
DOI 10.1101/2020.07.16.207795 - BiochemistrybioRxivPreprint
Enabling in vivo Analysis Via Nanoparticle-mediated Intracellular Assay Probe Delivery: Using RAS as the Prototype
F. Chen, Q. Liu, T. Hilliard…·D. Wang
This paper develops a nanoparticle-mediated method to enable in vivo analysis of RAS protein activity by delivering a fluorescent GTP analog into cells.
DOI 10.1101/2020.07.05.188862 - Evolutionary BiologybioRxivPreprint
Evolution of a sex megachromosome
M. A. Conte, F. B. Clark, R. B. Roberts…·T. D. Kocher
The paper investigates the evolution of a sex megachromosome in cichlid fish, finding it consists of three distinct regions and contains unique genomic features.
DOI 10.1101/2020.07.02.182808 - MicrobiologybioRxivPreprint
PacC-dependent adaptation and modulation of host cellular pH controls hemibiotrophic invasive growth and disease development by the rice blast fungus
X.-L. Chen, D. He, C. Yin…·Y.-L. Peng
This study identifies the PacC-dependent pH signaling pathway in the rice blast fungus Magnaporthe oryzae, showing it regulates host pH changes and the switch between biotrophic and necrotrophic growth, essential for disease development.
DOI 10.1101/2020.06.22.164590 - MicrobiologybioRxivPreprint
Rapid detection of SARS-CoV-2 and other respiratory viruses by using LAMP method with Nanopore Flongle workflow
J. Li, W. Quan, S. Yan…·Y. Liang
This paper describes a rapid method using LAMP and Nanopore Flongle for detecting SARS-CoV-2 and other respiratory viruses in under two hours.
DOI 10.1101/2020.06.03.131474 - Plant BiologybioRxivPreprint
Tomato fruit susceptibility to fungal disease can be uncoupled from ripening by suppressing susceptibility factors
C. J. Silva, C. van den Abeele, I. Ortega Salazar…·B. Blanco-Ulate
This study identifies pectate lyase (PL) as a susceptibility factor in tomato fruit ripening, showing that suppressing PL reduces fungal disease susceptibility without affecting defense responses.
DOI 10.1101/2020.06.03.132829