Author
H. Zhang
Albert Einstein College of Medicine
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2022-2023 · peak 19/yrCo-Author Collaboration Network
10 top collaborators · 32 mutual co-author links396 papers
Recent·Most cited
- BiophysicsbioRxivPreprint
Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation?
H. Zhang, J. Zhang, H. Zhao…·Y. Deng
The paper evaluates deep learning methods for molecular conformation generation by comparing them to a stochastic 'infinite physical monkey' approach, finding that the monkey method outperforms most DL-based methods in coverage and docking success.
DOI 10.1101/2023.03.08.531607 - Evolutionary BiologybioRxivPreprint
Parasitism and locomotory capacity calibrate the mitogenomic evolutionary rates in Bilateria
I. Jakovlic, H. Zou, T. Ye…·D. Zhang
The paper examines mitogenomic evolutionary rates in Bilateria, finding that parasitism and reduced locomotory capacity are associated with elevated rates, explaining a significant portion of variance in branch lengths.
DOI 10.1101/2023.02.28.530434 - Plant BiologybioRxivPreprint
Epigenetic modifications mediate cultivar-specific root development and metabolic adaptation to nitrogen availability in wheat
DOI 10.1101/2023.02.24.529862 - ImmunologybioRxivPreprint
Excessive apoptosis of naïve T cells resulting hyperactivation as a cause of mammalian aging
L. Wang, X. Zhang, H. Zhang…·B. Zhou
This study shows that excessive apoptosis in naïve T cells causes hyperactivation and accelerates aging in mice, suggesting T-cell changes are a cause of aging.
DOI 10.1101/2023.02.24.529806 - Cell BiologybioRxivPreprint
MicroRNA-195-3p as a potential regulator of hypoxic injury in HUVECs
W. Zhang, B. Liu, Y. Wang…·W. Shan
This study investigates microRNA-195-3p's role in hypoxia-induced injury of human umbilical vein endothelial cells, finding it upregulated and protective against hypoxia.
DOI 10.1101/2023.02.23.529661 - Cell BiologybioRxiv
A cleaved METTL3 potentiates the METTL3-WTAP interaction and breast cancer progression
J. Zhang, C. Yan, J. Xiong…·H. Zhang
This study identifies a cleaved form of METTL3, METTL3a, which enhances METTL3-WTAP interaction and promotes breast cancer progression through m6A methylation and mTOR activation.
DOI 10.7554/elife.87283 - Plant BiologybioRxivPreprint
The Alfin-like transcription factor GmAlfin09 regulates endoplasmic reticulum stress in soybean via a peroxidase GmPRDX6
K. Chen, D. Guo, J. Yan…·M. Chen
This study identifies GmAlfin09 as a transcription factor that enhances ER stress resistance in soybean by upregulating GmPRDX6, which reduces ROS levels and maintains ER homeostasis.
DOI 10.1101/2023.02.05.527234 - BiophysicsbioRxiv
Deep learning permits imaging of multiple structures with the same fluorophores
L. Jin, J. Liu, H. Zhang…·X. Liu
The paper introduces DBSN, a deep learning method that enables imaging of multiple subcellular structures using only two fluorescent labels, overcoming spectral overlap limitations.
DOI 10.1016/j.bpj.2024.09.001 - BiochemistrybioRxiv
A Methylation-Phosphorylation Switch Controls EZH2 Stability and Hematopoiesis
P. Guo, K. Rajawasam, T. Trinh…·H. Zhang
The paper identifies a methylation-phosphorylation switch regulating EZH2 stability and hematopoiesis through AKT-mediated phosphorylation of EZH2.
DOI 10.7554/elife.86168 - Cell BiologybioRxivPreprint
Homocysteine accelerates hepatocyte autophagy by upregulation of TFEB via DNMT3b-mediated DNA hypomethylation
A. Yang, W. Zeng, Y. Hao…·Y. Jiang
This study shows homocysteine increases hepatocyte autophagy by upregulating TFEB through DNMT3b-mediated DNA hypomethylation of the TFEB promoter.
DOI 10.1101/2023.01.30.526165 - BiochemistrybioRxivPreprint
Ultra-Fast Bioorthogonal Spin-Labeling and Distance Measurements in Mammalian Cells Using Small, Genetically Encoded Tetrazine Amino Acids
S. Jana, E. G. B. Evans, H. S. Jang…·R. A. Mehl
This paper introduces a fast bioorthogonal reaction system for in-cell spin-labeling and DEER spectroscopy, enabling structural studies of proteins in live mammalian cells.
DOI 10.1101/2023.01.26.525763 - Pharmacology & ToxicologybioRxiv
SynBa: Improved estimation of drug combination synergies with uncertainty quantification
H. Zhang, C. H. Ek, M. Rattray, M. Milo
SynBa improves drug combination synergy estimation with uncertainty quantification, enhancing accuracy and reliability for decision-making.
DOI 10.1093/bioinformatics/btad240 - ImmunologybioRxivPreprint
Amino acid transporter SLC7A5 regulates Paneth cell function to affect the intestinal inflammatory response
L. Bao, l. fu, y. su…·y.-b. shi
This study shows that SLC7A5 regulates Paneth cell function, affecting intestinal inflammation and cell proliferation through mTORC1 signaling.
- Cancer BiologybioRxivPreprint
Single-cell transcriptomic landscape deciphers novel olfactory neuroblastoma subtypes and intratumoral heterogeneity
J. Yang, X. Song, H. Zhang…·H. Yu
This study uses single-cell RNA sequencing to identify novel subtypes and intratumoral heterogeneity in olfactory neuroblastoma.
- Pharmacology & ToxicologybioRxiv
Quantitative proteomics combined with network pharmacology analysis unveils the biological basis of Schisandrin B in treating diabetic nephropathy
J. Song, B. Zhang, X. Lyu…·J. Kang
This study identifies the mechanisms of Schisandrin B in treating diabetic nephropathy using network pharmacology and quantitative proteomics in rats.
DOI 10.2174/1386207326666230505111903 - EcologybioRxiv
Nitrogen niche partitioning between tropical legumes and grasses conditionally weakens under elevated CO2
A. C. Churchill, H. Zhang, G. w. Kim…·S. A. Power
This study examines how nitrogen niche partitioning between tropical legumes and grasses affects over-yielding under elevated CO2, finding that niche partitioning and over-yielding decrease in mixtures under higher CO2.
DOI 10.1111/1365-2435.14595 - Cell BiologybioRxiv
Abnormal expression of Prolyl oligopeptidase (POP) and its catalytic products Ac-SDKP contributes to the ovarian fibrosis change in Polycystic ovary syndrome (PCOS) mice
S. Han, S. Wang, X. Fan…·C. Zhang
This study shows that reduced Prolyl oligopeptidase (POP) and its product Ac-SDKP contribute to ovarian fibrosis in PCOS mice by altering MMP-2 and TGF-β1 expression.
DOI 10.3390/biomedicines11071927 - Cancer BiologybioRxiv
VHL Mutation Drives Human Clear Cell Renal Cell Carcinoma Progression Through PI3K/AKT-Dependent Cholesteryl Ester Accumulation
S. Zhang, T. Fang, Y. He…·S. Yue
This study identifies VHL mutation as a driver of CE accumulation in ccRCC through the PI3K/AKT pathway, showing that inhibiting cholesterol esterification suppresses tumor aggressiveness.
- MicrobiologybioRxivPreprint
Nirmatrelvir Resistance in SARS-CoV-2 Omicron_BA.1 and WA1 Replicons and Escape Strategies
S. Lan, G. Neilsen, R. L. Slack…·S. G. Sarafianos
This study identifies E166V as a key mutation conferring high nirmatrelvir resistance in SARS-CoV-2, with differential effects on Omicron and WA1 variants, and explores strategies to overcome resistance.
DOI 10.1101/2022.12.31.522389 - Cell BiologyNature CommunicationsPeer-reviewed
A Genome-wide CRISPR Screen Identifies WDFY3 as a Novel Regulator of Macrophage Efferocytosis
J. Shi, X. Wu, Z. Wang…·H. Zhang
This study identifies WDFY3 as a novel regulator of macrophage efferocytosis through a genome-wide CRISPR screen, revealing its role in actin depolymerization and lysosomal acidification.
- Plant BiologybioRxivPreprint
XAP5 CIRCADIAN TIMEKEEPER regulates RNA splicing and the circadian clock via genetically separable pathways
H. Zhang, R. W. Kumimoto, S. Anver, S. Harmer
This study identifies XCT as a circadian clock regulator in Arabidopsis that influences RNA splicing and the circadian clock through distinct genetic pathways.
DOI 10.1101/2022.12.20.521243 - Plant BiologybioRxivPreprint
Genetic basis and selection of glyceollin induction in wild soybean
F. Yasmin, H. Zhang, L. Leamy…·B.-H. Song
This study identifies genetic factors associated with glyceollin induction in wild soybeans using metabolite-based genome-wide association, finding SNPs and gene clusters linked to this trait.
DOI 10.1101/2022.12.17.520864 - MicrobiologybioRxivPreprint
Identification of a key genetic factor governing arabinan utilization in the gut microbiome suggests a novel therapeutic target for constipation
C. Zhang, L. Yu, C. Ma…·Q. Zhai
The paper identifies the abfA cluster as a key genetic factor for arabinan utilization in gut microbiota, showing its therapeutic potential for constipation through improved gut motility and metabolite production.
- MicrobiologybioRxivPreprint
From whole genome to probiotic candidates: a study of potential Lactobacillus strain selection for vaginitis treatment
J. Lyu, M. Gao, S. Zhao…·X. Zhang
This study identifies two Lactobacillus strains with probiotic properties for vaginitis treatment using genomic analysis, in vitro tests, and in vivo experiments.
DOI 10.1101/2022.12.11.519948 - BioengineeringbioRxiv
Focused ultrasound-mediated brain genome editing
Y.-H. Lao, R. Ji, J. K. Zhou…·K. W. Leong
This paper demonstrates a method to edit the brain genome in mammals using focused ultrasound to temporarily open the blood-brain barrier for CRISPR/Cas9 delivery via intravenous injection.
DOI 10.1073/pnas.2302910120 - BiophysicsbioRxivPreprint
Effect of rectified gap junctional electrical coupling and spatial distribution of biologically engineered pacemaking cells on ventricular excitation
Y. Li, Q. Li, J. Liu…·H. Zhang
This study uses computational models to show that weak-rectified gap junction coupling and electrically isolated distribution of bio-pacemaker cells enhance their pacing efficiency.
DOI 10.1101/2022.12.02.518808 - MicrobiologyCell Host & MicrobePeer-reviewed
Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine
Y. Wu, S. Wang, Y. Zhang…·N. Xia
This study develops a bivalent vaccine using lineage-mosaic and mutation-patched spike proteins that elicit broad-spectrum antibodies and protect against multiple SARS-CoV-2 variants in hamsters.
DOI 10.1016/j.chom.2022.10.011 - BioengineeringProtein & CellPeer-reviewed
An engineered xCas12i with high activity, high specificity and broad PAM range
H. Zhang, X. Kong, M. Xue…·H. Yang
This paper identifies and engineers a high-fidelity Cas12i variant with broad PAM recognition and minimal off-target activity for improved genome editing.
DOI 10.1093/procel/pwac052 - BiochemistrybioRxivPreprint
Formation process of the twinning β-form anhydrous guanine platelets in the scallop eyes
This study reports the formation mechanism of twinning β-form anhydrous guanine microplatelets in scallop eyes, revealing an intermediate amorphous phase and a two-step crystallization process.
DOI 10.1101/2022.11.14.516375