Author
Y. He
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2024 · peak 35/yrCo-Author Collaboration Network
10 top collaborators · 38 mutual co-author links155 papers
Recent·Most cited
- Cancer BiologybioRxiv
VHL Mutation Drives Human Clear Cell Renal Cell Carcinoma Progression Through PI3K/AKT-Dependent Cholesteryl Ester Accumulation
S. Zhang, T. Fang, Y. He…·S. Yue
This study identifies VHL mutation as a driver of CE accumulation in ccRCC through the PI3K/AKT pathway, showing that inhibiting cholesterol esterification suppresses tumor aggressiveness.
- BiochemistrybioRxivPreprint
Discovery and molecular basis of chloride as an allosteric activator and catalytic inhibitor for Class-D beta-lactamases.
Q. Zhou, H. Bell, P. Catalan…·Y. Jin
The paper identifies chloride as an allosteric activator and inhibitor of Class-D beta-lactamases, revealing its dual role in enzyme kinetics and suggesting new antibiotic strategies.
DOI 10.1101/2022.12.20.520813 - MicrobiologybioRxivPreprint
Characterization of a novel botybirnavirus with a unique dsRNA infecting Didymella theifolia from tea plants
The paper characterizes a novel botybirnavirus, DtBRV1, found in Didymella theifolia, which infects tea plants, and identifies a unique dsRNA unit with distinct molecular features.
DOI 10.1101/2022.12.06.519410 - Plant BiologybioRxiv
Boosting wheat functional genomics via indexed EMS mutant library of KN9204
D. Wang, Y. Li, H. Wang…·J. Xiao
The paper generates and indexes an EMS mutant library for KN9204 wheat to enhance functional genomics and genetic manipulation for agronomic traits.
DOI 10.1016/j.xplc.2023.100593 - BioengineeringbioRxivPreprint
Effects of cardiac function alterations on the risk of postoperative thrombotic complications in patients receiving endovascular aortic repair
This study uses a computational model to show that ventricular systolic function affects thrombus formation after EVAR, with specific correlations identified.
- BiophysicsbioRxivPreprint
Flow-induced mechanical coupling between perinuclear actin cap and nucleus governs spatiotemporal regulation of YAP transport
This study investigates how flow-induced mechanical forces regulate YAP nucleocytoplasmic transport through actin cap formation and nuclear stiffness changes, revealing a unified mechanism linking mechanical stimulation to transcriptional regulation.
- Cancer BiologybioRxivPreprint
Repurposing clemastine to target glioblastoma cell stemness
M. A. Sun, R. Yang, H. Liu…·Y. He
This study shows clemastine, an antihistamine, reduces glioblastoma stemness by targeting EBP, a cholesterol pathway enzyme, and promotes differentiation of oligodendrocyte progenitor cells.
DOI 10.1101/2022.11.05.515291 - Cell BiologybioRxivPreprint
Integrated transcriptome and lineage analyses reveal novel catecholaminergic cardiomyocytes contributing to the cardiac conduction system in murine heart
T. Sun, A. Grassam-Rowe, Z. Pu…·M. Lei
This study identifies a novel catecholaminergic cardiomyocyte population expressing Dbh that contributes to the murine cardiac conduction system through transcriptomic, genetic, and optogenetic analyses.
- BiochemistrybioRxiv
Design and characterization of a protein fold switching network
B. Ruan, Y. He, Y. Chen…·P. N. Bryan
The paper designs and characterizes a protein fold switching network where single amino acid substitutions can switch fold and function in proteins.
DOI 10.1038/s41467-023-36065-3 - Cell BiologybioRxivPreprint
Extracellular matrix stiffness regulates fibroblast differentiation by influencing DNA methyltransferase 1 expression through microtubule polymerization
Z. Zhao, L. Hong, G. Huang…·W. Han
This study shows that extracellular matrix stiffness influences fibroblast differentiation by modulating DNMT1 expression via microtubule polymerization.
DOI 10.1101/2022.10.20.513009 - Cell BiologybioRxiv
Gaq-PKD/PKCμ regulates the IkB transcription to limit the NF-kB mediated inflammatory response essential for early pregnancy
Y. Jiang, Y. He, S. Liu…·G. Shi
This study shows that Gaq-PKD/PKCμ regulates IκB transcription to limit NF-κB-mediated inflammation, essential for successful early pregnancy.
DOI 10.7554/elife.83083 - BiophysicsbioRxiv
Field dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging
This paper introduces FD-DeepLoc, a deep learning method for high-throughput 3D super-resolution imaging over a large field of view using a sCMOS camera.
DOI 10.1038/s41592-023-01775-5 - MicrobiologybioRxivPreprint
A special satellite-like dsRNA of a novel hypovirus from Pestalotiopsis fici broadens the definition of satellite
Z. Han, J. Liu, L. Kong…·W. Xu
The paper identifies and characterizes a novel hypovirus and its satellite-like dsRNA from Pestalotiopsis fici, showing it lacks a poly(A) tail and ORF, and negatively regulates the helper virus.
DOI 10.1101/2022.09.22.508974 - MicrobiologybioRxivPreprint
Neuraminidase activity modulates cellular co-infection during influenza A virus multicycle growth
Z. Guo, Y. He, A. N. Benegal, M. D. Vahey
This study identifies neuraminidase activity as a factor controlling cellular co-infection during influenza A virus growth, showing it modulates viral spread by affecting receptor availability.
DOI 10.1101/2022.09.20.508375 - Evolutionary BiologybioRxivPreprint
Nucleotide and structural polymorphisms of the eastern oyster genome paint a mosaic of divergence, selection, and human impacts
J. B. Puritz, H. Zhao, X. Guo…·M. Gomez-Chiarri
This study analyzes the genome of eastern oysters to reveal genetic diversity, selection pressures, and human impacts across populations.
DOI 10.1101/2022.08.29.505629 - MicrobiologyPLOS PathogensPeer-reviewed
Engineered disulfide reveals structural dynamics of locked SARS-CoV-2 spike
K. Qu, Q. Chen, K. A. Ciazynska…·J. A. G. Briggs
This study engineers a SARS-CoV-2 spike protein with a disulfide bond to stabilize the locked conformation, revealing structural dynamics and the role of domain D in conformational changes and viral fitness.
DOI 10.1371/journal.ppat.1010583 - ImmunologybioRxivPreprint
Development of Equine Polyclonal Antibodies as a Broad-Spectrum Therapy Against SARS-CoV-2 Variants
This paper develops equine polyclonal antibodies that broadly neutralize major SARS-CoV-2 variants, showing high efficacy in vitro and ex vivo with low cost and potential for large-scale production.
DOI 10.1101/2022.07.27.501719 - MicrobiologybioRxiv
BysR, a LysR-type Pleiotropic Regulator, Controls Production of Occidiofungin by Activating the LuxR-type transcriptional regulator AmbR1 in Burkholderia sp. JP2-270
W. Lijuan, L. Tang, Y. He…·Z. E
This paper identifies BysR as a LysR-type regulator that activates ambR1 to control occidiofungin production in Burkholderia sp. JP2-270 and reveals its broader regulatory role in metabolism and motility.
DOI 10.1128/spectrum.02684-22 - BiophysicsbioRxiv
Six-Dimensional Single-Molecule Imaging with Isotropic Resolution using a Multi-View Reflector Microscope
O. Zhang, Z. Guo, Y. He…·M. D. Lew
The paper introduces a raMVR microscope that achieves 6D super-resolution imaging of single molecules with high precision in 3D position and orientation.
- Cancer BiologybioRxiv
Receptor for Hyaluronan-Mediated Motility (RHAMM) defines an invasive niche associated with tumor progression and predicts poor outcomes in breast cancer patients.
S. E. Tarullo, Y. He, C. Daughters…·A. C. Nelson
This study identifies RHAMM as a marker of invasive niches in breast cancer, showing its association with poor outcomes and promoting invasion through a 27-gene signature.
DOI 10.1002/path.6082 - ImmunologybioRxiv
The leucine-rich repeat (LRR) domain of NLRP3 is required for NLRP3 inflammasome activation in macrophages
Y. Duan, J. Wang, J. Cai…·Y. He
This study shows that the LRR domain of NLRP3 is essential for its inflammasome activation in macrophages by enabling self-association, oligomerization, and interaction with NEK7.
DOI 10.1016/j.jbc.2022.102717 - Cell BiologybioRxivPreprint
Assessment of Human Renal Transporter Based Drug-Drug Interactions Using Proximal Tubule Kidney-Chip
A. R. Nookala, J. Ronxhi, J. Sliz…·D. McKenzie
This study develops a human Proximal Tubule Kidney-Chip to assess renal transporter-based drug-drug interactions and demonstrates its ability to predict clinical outcomes and clearance values.
DOI 10.1101/2022.05.12.491717 - BiophysicsbioRxiv
Deformable Mirror based Optimal PSF Engineering for 3D Super-resolution Imaging
This paper develops a framework for generating device-specific optimal PSFs for 3D super-resolution imaging using deformable mirrors, demonstrating superior performance over conventional PSFs.
DOI 10.1364/ol.460949 - MicrobiologybioRxiv
Molecular Architecture of the Chikungunya Virus Replication Complex
Y. B. Tan, D. Chmielewski, M. C. Y. Law…·W. Chiu
This study determines the structure of the chikungunya virus replication complex at near-atomic and subnanometer resolution, revealing its molecular architecture and implications for antiviral therapy.
- Plant BiologybioRxiv
Time-series monitoring of transgenic maize seedlings phenotyping exhibiting glyphosate tolerance
M. Tao, X. Feng, Y. He…·Y. Wei
This study develops a hyperspectral imaging-based method to monitor leaf chlorophyll content and assess glyphosate tolerance in maize seedlings using chlorophyll a fluorescence and chemometrics.
DOI 10.3390/pr10112206 - Cell BiologybioRxivPreprint
Efficient Neutralization of SARS-CoV-2 Omicron and Other VOCs by a Broad Spectrum Antibody 8G3
H. Ma, C.-T. K. Tseng, H. Zong…·J. Zhu
This study evaluates the neutralization efficacy of antibodies against SARS-CoV-2 Omicron and other variants, finding that antibody 8G3 maintains broad neutralizing activity while EUA antibodies lose effectiveness.
DOI 10.1101/2022.02.25.482049 - Cell BiologybioRxiv
SpheroidAnalyseR - an online platform for analysing data from 3D spheroids or organoids grown in 96-well plates
R. Barrow, J. N. Wilkinson, Y. He…·L. F. Stead
SpheroidAnalyseR is an R Shiny app that enables fast, automated analysis of 3D spheroid or organoid growth data from 96-well plates, improving efficiency and reproducibility.
DOI 10.14440/jbm.2022.388