Author
Y. Sun
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2016-2024 · peak 66/yrCo-Author Collaboration Network
10 top collaborators · 36 mutual co-author links233 papers
Recent·Most cited
- Evolutionary BiologybioRxiv
Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes
X. Zhang, Y. Sun, J. B. Landis…·H. Wang
This study analyzes plastome sequences from Gentianeae to show gene tree discordance and evolutionary rate heterogeneity among plastid genes, suggesting the need for more nuanced phylogenomic approaches.
DOI 10.1186/s12870-020-02518-w - Cell BiologybioRxiv
Senescent stromal cells promote cancer resistance through SIRT1 loss-potentiated overproduction of small extracellular vesicles
L. Han, Q. Long, S. Li…·Y. Sun
This study shows senescent stromal cells release sEVs that promote cancer drug resistance via SIRT1 loss, and suggests targeting SIRT1 could prevent this resistance.
DOI 10.1158/0008-5472.can-20-0506 - ImmunologybioRxivPreprint
Single-cell RNA-Seq reveals the link between CD45 isoforms and tumor-infiltrating T cells heterogeneity in liver cancer
B. Zhou, S. Liu, L. Wu…·S. Liu
The paper analyzes CD45 isoforms in T cells from liver cancer patients to show their role in T cell heterogeneity and function.
- ImmunologybioRxiv
Mitochondrial Complex II In Intestinal Epithelial Cells Regulates T-cell Mediated Immunopathology
H. Fujiwara, A. V. Mathew, I. Kovalneko…·P. Reddy
This study identifies mitochondrial complex II disruption in intestinal epithelial cells as a key driver of T-cell mediated intestinal immunopathology across multiple disease models.
DOI 10.1038/s41590-021-01048-3 - Plant BiologybioRxivPreprint
Response patterns and mechanisms of plants to water stress
H. Ruan, Y. Sun, C. Wang, H. Y. H. Chen
This study analyzes plant responses to water stress through a global meta-analysis, finding that ROS overproduction is a primary response mechanism and that plants acclimate over time.
DOI 10.1101/2020.03.02.973610 - BioengineeringBiomaterialsPeer-reviewed
Human cardiac fibrosis-on-a-chip model recapitulates disease hallmarks and can serve as a platform for drug screening
O. N. Mastikhina, B.-U. Moon, K. Williams…·S. S. Nunes
This paper develops a cardiac fibrosis-on-a-chip model that recapitulates fibrosis hallmarks and enables drug screening for anti-fibrotic therapies.
DOI 10.1016/j.biomaterials.2019.119741 - Evolutionary BiologybioRxiv
High standing genetic variation in an invasive plant allows immediate evolutionary response to climate warming
Y. Sun, O. Bossdorf, R. D. Grados…·H. Mueller-Schaerer
This study shows that invasive common ragweed populations can rapidly evolve in response to climate warming within a single generation, with greater genetic divergence and phenotypic convergence under warming conditions.
DOI 10.1111/gcb.15291 - Evolutionary BiologybioRxiv
Sampling bias and model choice in continuous phylogeography: getting lost on a random walk
A. Kalkauskas, U. Perron, Y. Sun…·N. De Maio
The paper compares two phylogeographic models, showing that sampling bias affects Brownian Motion Phylogeography (BMP) and that the spatial Lambda-Fleming-Viot process (LambdaFV) is more robust but applicable to different scenarios.
DOI 10.1371/journal.pcbi.1008561 - Plant BiologybioRxiv
Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing
Z. Liu, Y. Zhou, J. Guo…·X. Sun
The paper uses single-cell RNA sequencing to analyze stomatal lineage cell development in Arabidopsis, identifying new marker genes and transcriptional networks.
DOI 10.1016/j.molp.2020.06.010 - MicrobiologybioRxivPreprint
Analysis of metagenome-assembled genomes from the mouse gut microbiota reveals distinctive strain-level characteristics
This study identifies strain-level features of the mouse gut microbiota using metagenome-assembled genomes, revealing distinct genomic and functional characteristics compared to human gut microbes.
DOI 10.1101/2020.01.29.926196 - Cell BiologybioRxivPreprint
Isolation and long-term expansion of a single adult human renal epithelial cell with efficient kidney regeneration capacity
Y. Wang, Z. Zhao, Q. Ma…·W. Zuo
This study isolates and expands SOX9+ renal epithelial cells from adult humans, showing their ability to regenerate kidney tissue in mice.
- MicrobiologybioRxivPreprint
Derived ecological niches of indoor microbes are crucial for asthma symptoms in university dormitories
The study links indoor microbial communities in university dormitories to asthma symptoms, finding specific taxa from different ecological niches are associated with increased or protective effects on asthma.
DOI 10.1101/2020.01.05.893529 - BiophysicsChemical SciencePeer-reviewed
Quantifying Tensile Forces at Cell-Cell Junctions with a DNA-based Fluorescent Probe
B. Zhao, N. Li, T. Xie…·M. You
This paper introduces a DNA-based fluorescent probe, DNAMeter, to quantify intercellular tensile forces through real-time imaging and fluorescence signal activation.
DOI 10.1039/d0sc01455a - BiophysicsbioRxiv
Parkinson's disease associated mutation E46K of α-synuclein triggers the formation of a novel fibril structure
K. Zhao, Y. Li, Z. Liu…·C. Liu
This study determines the cryo-EM structure of a novel α-synuclein fibril formed by the E46K mutation, showing structural changes and altered stability compared to wild-type fibrils.
- MicrobiologybioRxivPreprint
Distinct microbiome composition of floor and air dust distort richness estimation in university dormitories
This study compares microbial composition in floor and air dust from university dormitories, showing significant differences that affect downstream microbiome analysis.
DOI 10.1101/855684 - Cell BiologybioRxiv
LIMD1 phase separation contributes to cellular mechanics and durotaxis by regulating focal adhesion dynamics in response to force
Y. Wang, C. Zhang, S. Shao…·C. Wu
This study shows LIMD1 phase separation at focal adhesions regulates force sensing and durotaxis by controlling FA dynamics in response to mechanical cues.
DOI 10.1016/j.devcel.2021.04.002 - Cancer BiologybioRxiv
Metabolic remodeling by TIGAR overexpression is a therapeutic target in esophageal squamous-cell carcinoma
J. Chu, X. Niu, J. Chang…·C. Wu
This study identifies TIGAR as a driver of metabolic remodeling in ESCC, showing that targeting the glutamine pathway improves therapeutic outcomes in TIGAR-overexpressed tumors.
DOI 10.7150/thno.41427 - Cell BiologybioRxiv
Changes in the expression of interleukin-10 in myocardial infarction and its relationship with macrophage activation and cell apoptosis
w. yang, s. li, y. zhao…·x. shang
This study examines changes in IL-10 expression in myocardial infarction and its association with macrophage activation and cardiomyocyte apoptosis over time.
DOI 10.21037/atm-20-3349 - PathologyRNA BiologyPeer-reviewed
Synonymous SNPs of viral genes facilitate virus to escape host antiviral RNAi immunity
This study shows that synonymous SNPs in viral genes of WSSV reduce RNAi effectiveness by causing siRNA-target mismatches, allowing the virus to evade host immunity.
DOI 10.1080/15476286.2019.1656026 - BiochemistryRNAPeer-reviewed
Biophysical characterizations of the recognition of the AAUAAA polyadenylation signal
The paper characterizes the interactions between the AAUAAA polyadenylation signal and protein factors using fluorescence polarization, showing specific affinity and sequence requirements for recognition.
DOI 10.1261/rna.070870.119 - BioengineeringbioRxivPreprint
Lossless and Contamination-Free Digital PCR
P. Liao, M. Jiang, Z. Chen…·Y. Huang
This paper introduces CLEAR-dPCR, a lossless and contamination-free digital PCR technology that improves accuracy and dynamic range compared to existing platforms.
DOI 10.1101/739243 - Cell BiologybioRxiv
Direct comparison of clathrin-mediated endocytosis in budding and fission yeast reveals conserved and evolvable features
Y. Sun, J. Schoeneberg, S. Chen…·D. G. Drubin
This study compares clathrin-mediated endocytosis in budding and fission yeast, finding conserved mechanisms and species-specific adaptations in actin assembly and membrane invagination.
DOI 10.7554/elife.50749 - BiochemistrybioRxiv
Widespread arginine phosphorylation in human cells - a novel protein PTM revealed by mass spectrometry
S. Fu, C. Fu, Q. Zhou…·Y. Zhao
This study identifies widespread arginine phosphorylation in human cells using a novel phosphoproteomic workflow, revealing 152 high-confidence sites across 118 proteins.
DOI 10.1007/s11426-019-9656-7 - Plant BiologyPeerJPeer-reviewed
Reference genes for RT-qPCR normalisation in different tissues, developmental stages and stress conditions of Hypericum perforatum
Z. Wang, W. Zhou, L. Yang…·S. Wang
This study identifies stable reference genes for RT-qPCR normalization in Hypericum perforatum across tissues, developmental stages, and stress conditions.
DOI 10.7717/peerj.7133 - Cell BiologybioRxiv
Molecular pathway analysis indicates a distinct metabolic and immune phenotype in women with right-sided colon cancer
C. Johnson, Y. Sun, V. Mironova…·S. A. Khan
This study identifies a distinct metabolic and immune phenotype in women with right-sided colon cancer through gene expression analysis of public datasets.
DOI 10.1016/j.tranon.2019.09.004 - Cell BiologybioRxiv
Nuclear actin regulates inducible transcription by enhancing RNA polymerase II clustering
M. Wei, X. Fan, M. Ding…·Y. Sun
The paper shows nuclear actin enhances RNA polymerase II clustering during inducible transcription, facilitating rapid gene expression in response to stimuli like serum and interferon-gamma.
DOI 10.1126/sciadv.aay6515 - BiophysicsbioRxiv
Single-organelle quantification reveals the stoichiometric and structural variability of carboxysomes dependent on the environment
Y. Sun, A. Wollman, F. Huang…·L. Liu
The paper determines the absolute protein stoichiometry of carboxysomes and reveals their organizational variability in response to microenvironmental changes.
DOI 10.1105/tpc.18.00787 - Cancer BiologybioRxiv
Mutant p53 Drives Clonal Hematopoiesis through Modulating Epigenetic Pathway
S. Chen, Q. Wang, H. Yu…·Y. Liu
This study identifies mutant p53's role in promoting clonal hematopoiesis by modulating the EZH2-mediated epigenetic pathway.
DOI 10.1038/s41467-019-13542-2