Author
Z. Jin
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2024 · peak 8/yrCo-Author Collaboration Network
10 top collaborators · 18 mutual co-author links32 papers
Recent·Most cited
Ultrasound-actuated drug delivery with acoustic percolation switches
M. P. Abundo, A. T. Tifrea, M. T. Buss, P. Barturen-Larrea, Z. Jin, D. Malounda, M. G. Shapiro
This paper introduces a drug delivery system using ultrasound to trigger release from hydrogels containing gas vesicles, demonstrating targeted delivery in a rat colitis model.
bioRxiv · May 10, 2024 · PreprintBioengineering
Directed Evolution of Acoustic Reporter Genes Using High-Throughput Acoustic Screening
R. C. Hurt, Z. Jin, M. Soufi, K. K. Wong, D. P. Sawyer, H. K. Shen, P. Dutka, R. Deshpande, R. Zhang, D. R. Mittelstein, M. G. Shapiro
The paper evolves acoustic reporter genes using high-throughput acoustic screening to enhance nonlinear ultrasound scattering.
bioRxiv · Mar 30, 2024 · PreprintBioengineering
Ultrasonic reporters of calcium for deep tissue imaging of cellular signals
Z. Jin, A. Lakshmanan, R. Zhang, T. A. Tran, C. Rabut, P. Dutka, M. Duan, R. C. Hurt, D. Malounda, Y. Yao, M. G. Shapiro
This paper introduces a genetically encoded ultrasonic calcium reporter (URoC) for noninvasive in vivo imaging of calcium signaling in mammals.
bioRxiv · Nov 9, 2023 · PreprintBioengineering
Dense Sampling of Taxa and Genomes Untangles the Phylogenetic Backbone of a Non-model Plant Lineage Rife with Deep Hybridization and Allopolyploidy
C. Xu, Z. Jin, H. Wang, S. Xie, X. Lin, R. G. J. Hodel, Y. Zhang, D. Ma, B. Liu, G. Liu, S. Jin, L. Zhao, J. Wu, C. Ren, D. Hong, B. Liu
The paper constructs a robust phylogenetic backbone for the Campanuleae tribe using genomic data and phylogenetic methods, revealing hybridization and allopolyploidy as key drivers of diversification.
bioRxiv · Oct 21, 2023 · PreprintPlant Biology
Sirenian genomes illuminate the evolution of fully aquatic species within the mammalian superorder Afrotheria
R. Tian, Y. Zhang, H. Kang, F. Zhang, Z. Jin, J. Wang, P. Zhang, X. Zhou, J. Lanyon, H. Sneath, L. Woolford, G. Fan, S. Li, I. Seim
This study analyzes sirenian genomes to identify genomic adaptations to aquatic life and conservation challenges.
bioRxiv · Sep 1, 2023Evolutionary Biology
GABA, glucose and insulin orchestrate CD4+ T cells effector functions
Z. Jin, H. Hammoud, A. K. Bhandage, S. V. Korol, O. Trujeque-Ramos, S. Koreli, A. I. Chowdhury, F. A. Sandbaumhuter, E. Jansson, P. Bergstein, P. Andren, M. Kamali-Moghaddam, B. Birnir
This study shows that GABA, glucose, and insulin together regulate CD4+ T cell metabolic activity and inflammatory molecule release, with SGLTs playing a key role in glucose-dependent effects.
bioRxiv · Apr 18, 2023 · PreprintPhysiology
Long-term reliable neural decoding based on flexible implantable microelectronics and machine learning for seizure prediction application
Z. He, J. Zheng, J. Duan, Z. Jin, Z. Huang, S. Wu, Q. He, K.-F. So, S. Zhang, Z. Xiong
This study combines flexible implantable microelectronics with machine learning to achieve reliable long-term neural decoding for seizure prediction in epileptic mice.
bioRxiv · Mar 8, 2023 · PreprintBioengineering
Aberration modeling in deep learning for volumetric reconstruction of light-field microscopy
Y. Zhou, Z. Jin, Q. Zhao, B. Xiong, X. Cao
This paper introduces AM-VCD, a deep learning network that corrects spherical aberration in light-field microscopy to enable high-speed 3D imaging with uniform resolution.
bioRxiv · Feb 22, 2023Bioengineering
Magnetic Resonance Fingerprinting based Thermometry (MRFT): application to ex vivo imaging near DBS leads
E. Qian, P. Poojar, M. Fung, Z. Jin, J. T. Vaughan, D. Shrivastava, D. Gultekin, T. Fernandes, S. Geethanath
This paper introduces MRFT, a T1-based magnetic resonance thermometry method, and demonstrates its accuracy in estimating temperature near DBS leads compared to gold standard probes.
bioRxiv · Jan 11, 2023Bioengineering
Heavy metal pollution characteristics of soil around a copper-nickel mine tailings pond in the northwest arid area of China and evaluation of desert phytoremediation potential
J. Shi, Z. Jin, Z. Zhou, X. Wang, X. Yang, W. Qian
This study evaluates heavy metal pollution in soil near a copper-nickel mine tailings pond and assesses the phytoremediation potential of desert plants.
bioRxiv · Oct 24, 2022 · PreprintEcology
A di-arginine additive for dissociation of gold nanoparticle aggregates: A matrix-insensitive approach with applications in protease detection
M. Retout, Z. Jin, Y. Mantri, R. Borum, M. Creyer, W. Yim, T. He, Y.-C. Chang, J. Jokerst
This paper introduces a di-arginine additive for dissociating gold nanoparticle aggregates in complex matrices, enabling sensitive protease detection in biological fluids.
bioRxiv · Sep 30, 2022Bioengineering
Microbiota-stimulated Interleukin-22 regulates brain neurons and protects against stress-induced anxiety
A. Ilanges, M. Xia, J. Lu, L. Chen, R. Shiao, C. Wang, R. Feng, Z. Jin, H. Yi, Q. Qi, J. Li, M. Schneeberger, B. Lu, J. M. Friedman, X. Yu
This study identifies IL-22 as a key immune-to-brain signal that reduces stress-induced anxiety by acting on septal neurons.
bioRxiv · Sep 16, 2022 · PreprintImmunology
Geometric effects in gas vesicle buckling under ultrasound
H. Salahshoor, Y. Yao, P. Dutka, N. N. Nystrom, Z. Jin, E. Min, D. Malounda, G. J. Jensen, M. G. Shapiro
This study investigates how the geometry of gas vesicles affects their buckling behavior under ultrasound, showing diameter has an inverse cubic effect on buckling pressure while length has minimal impact.
bioRxiv · Jun 27, 2022Biophysics
An attempt to find the correlations between body weight and the composition of gut microbiota in Zhejiang and Shanghai
This study analyzes gut microbiota composition in individuals from Zhejiang and Shanghai to explore its potential link to obesity and BMI, finding some correlations but no significant differences.
bioRxiv · May 5, 2022 · PreprintMicrobiology
A miniaturized ultrasound transducer for monitoring full-mouth oral health: a preliminary study
B. Qi, A. Hariri, R. Khazaeinezhad, L. Fu, Y. Li, Z. Jin, W. Yim, T. He, Y. Cheng, J. Zhou, J. V. Jokerst
This study develops a miniaturized ultrasound transducer for full-mouth oral health monitoring, demonstrating high-resolution imaging and accurate gingival thickness measurement.
bioRxiv · Mar 31, 2022Bioengineering
Ultrafast amplitude modulation for molecular and hemodynamic ultrasound imaging
C. Rabut, D. Wu, B. Ling, Z. Jin, D. Malounda, M. G. Shapiro
This paper introduces an ultrafast nonlinear ultrasound imaging technique that improves sensitivity, field of view, and frame rate for molecular and hemodynamic imaging.
bioRxiv · May 18, 2021Bioengineering
Genomically mined acoustic reporter genes enable real-time in vivo monitoring of tumors and tumor-homing probiotics
R. C. Hurt, M. T. Buss, M. Duan, K. Wong, M. Y. You, D. P. Sawyer, M. B. Swift, P. Dutka, P. Barturen-Larrea, D. R. Mittelstein, Z. Jin, M. H. Abedi, A. Farhadi, R. Deshpande, M. G. Shapiro
The paper develops improved acoustic reporter genes for real-time in vivo tumor and therapeutic bacteria monitoring in mouse models.
bioRxiv · Apr 26, 2021 · PreprintBioengineering
Novel inhibition mechanism of SARS-CoV-2 main protease by ebselen and its derivatives
K. Amporndanai, X. Meng, H. Yang, Z.-J. Liu, L. Zhang, Y. Zhao, S. Hasnain, P. O'Neill, Z. Rao, Z. Jin, W. Shang
This study identifies a novel inhibition mechanism of SARS-CoV-2 main protease by ebselen and its derivatives through crystallography and mass spectrometry, revealing a unique covalent adduct formation and by-product generation.
bioRxiv · Mar 11, 2021Biophysics
Chemical Systems Biology Reveals Mechanisms of Glucocorticoid Receptor Signaling
N. Bruno, J. C. Nwachukwu, S. Srinivasan, C. C. Nettles, T. Izard, z. Jin, S. Boregowda, D. Phinney, O. Elemento, X. Liu, E. A. Ortlund, R. Houtman, D. Stavreva, G. Hager, T. Kamencka, , K. W. Nettles
The paper uses Ligand Class Analysis to identify target genes and coregulator interactions of glucocorticoid receptor ligands, revealing mechanisms linking ligand structure to physiological outcomes.
bioRxiv · Jun 15, 2020Pharmacology & Toxicology
Adipose tissue macrophages orchestrate β cell adaptation in obesity through secreting miRNA-containing extracellular vesicles
H. Gao, Z. Luo, Z. Jin, Y. Ji, W. Ying
This study shows that adipose tissue macrophage-derived extracellular vesicles containing miRNA-155 regulate β cell function and proliferation in obesity.
bioRxiv · Jun 12, 2020 · PreprintPhysiology
Relationship between Anti-Spike Protein Antibody Titers and SARS-CoV-2 In Vitro Virus Neutralization in Convalescent Plasma
E. Salazar, S. V. Kuchipudi, P. A. Christensen, T. N. Eagar, X. Yi, P. Zhao, Z. Jin, S. W. Long, R. J. Olsen, J. Chen, B. Castillo, C. Leveque, D. M. Towers, J. Lavinder, J. D. Gollihar, , J. M. Musser
This study finds a strong correlation between anti-RBD and anti-ECD IgG titers and in vitro virus neutralization titers in convalescent plasma, suggesting these titers can serve as surrogates for neutralizing activity.
bioRxiv · Jun 8, 2020Immunology
Structural basis for the inhibition of SARS-CoV-2 main protease by antineoplastic drug Carmofur
Z. Jin, Y. Zhao, Y. Sun, B. Zhang, H. Wang, Y. Wu, Y. Zhu, C. Zhu, T. Hu, X. Du, Y. Duan, J. Yu, X. Yang, X. Yang, K. Yang, , Z. Rao
This study shows Carmofur inhibits SARS-CoV-2 main protease by covalently binding to Cys145 and occupying the S2 subsite, with an EC50 of 24.30 M in cell-based viral replication assays.
bioRxiv · Apr 9, 2020Biochemistry
Visual function restoration in genetically blind mice via endogenous cellular reprogramming
X. Fu, J. Zhu, Y. Duan, G. Li, H. Cai, L. Zheng, C. Zhang, Z. Jin, X.-D. Fu, K. Zhang
This study restores vision in blind mice by reprogramming Muller glia to retinal neurons, demonstrating a potential treatment for end-stage retinal degeneration.
bioRxiv · Apr 8, 2020 · PreprintCell Biology
Structure-Based Design, Synthesis and Biological Evaluation of Peptidomimetic Aldehydes as a Novel Series of Antiviral Drug Candidates Targeting the SARS-CoV-2 Main Protease
W. Dai, B. Zhang, X.-M. Jiang, H. Su, J. Li, Y. Zhao, X. Xie, Z. Jin, J. Peng, F. Liu, C. Li, Y. Li, F. Bai, H. Wang, X. Cheng, , H. Liu
This study designs, synthesizes, and evaluates two peptidomimetic aldehydes as antiviral drug candidates targeting SARS-CoV-2 main protease, showing potent inhibition and anti-infection activity.
bioRxiv · Mar 25, 2020 · PreprintBiochemistry
Structure of Mpro from COVID-19 virus and discovery of its inhibitors
Z. Jin, X. Du, Y. Xu, Y. Deng, M. Liu, Y. Zhao, B. Zhang, X. Li, L. Zhang, C. Peng, Y. Duan, J. Yu, L. Wang, K. Yang, F. Liu, , H. Yang
The paper identifies a mechanism-based inhibitor of the COVID-19 virus main protease through structure-assisted drug design and high-throughput screening.
bioRxiv · Feb 26, 2020Biochemistry
Acoustogenetic Control of CAR T Cells via Focused Ultrasound
Y. WU, Y. Liu, Z. Huang, X. Wang, Z. Jin, J. Li, P. Limsakul, L. Zhu, M. Allen, Y. Pan, R. Bussell, A. Jacobson, T. Liu, S. Chien, Y. Wang
This paper develops an acoustogenetic method using focused ultrasound to control CAR T cells, enabling noninvasive activation to treat cancer with reduced off-tumor effects.
bioRxiv · Feb 18, 2020Bioengineering
The characterization of a humanized rabbit anti-TNF α monoclonal antibody?A nationwide RA treatment drug study
c. wang, x. Ni, y. Liu, z. Jin, h. Xia, N/A
This study develops a rabbit-derived anti-TNFα monoclonal antibody (HZ3M) showing improved neutralizing activity and longer half-life compared to existing therapies like Humira.
bioRxiv · Dec 18, 2019 · PreprintCell Biology
Depression, GABA and age correlate with the plasma levels of inflammatory markers.
A. K. Bhandage, J. L. Cunningham, Z. Jin, Q. Shhen, S. Bongiovanni, S. V. Korol, M. Syk, M. Kamali-Moghaddam, L. Ekselius, B. Birnir
The paper examines correlations between depression, age, GABA levels, and plasma inflammatory markers, identifying potential peripheral biomarkers for depression.
bioRxiv · Jul 2, 2019Pathology
GABAA receptor-mediated currents and hormone mRNAs in cells expressing more than one hormone transcript in intact human pancreatic islets
S. V. Korol, Z. Jin, B. Birnir
The paper examines GABAA receptor-mediated currents and hormone mRNA expression in human pancreatic islet cells expressing multiple hormone transcripts, finding that iGABAAR properties are specific to {beta} cells.
bioRxiv · May 12, 2019Cell Biology