Author
K. Yang
Johns Hopkins University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2017-2024 · peak 13/yrCo-Author Collaboration Network
10 top collaborators · 26 mutual co-author links50 papers
Recent·Most cited
Pro-inflammatory macrophage activation does not require inhibition of mitochondrial respiration
A. B. Ball, A. E. Jones, K. B. Nguyen, A. Rios, N. Marx, W. Y. Hsieh, K. Yang, B. R. Desousa, K. K. O. Kim, M. Veliova, Z. M. del Mundo, O. S. Shirihai, C. Beninca, L. Stiles, S. J. Bensinger, A. S. Divakaruni
This study shows that reduced oxidative phosphorylation is not required for pro-inflammatory macrophage activation, challenging the conventional model of mitochondrial reprogramming.
bioRxiv · May 10, 2024 · PreprintImmunology
Extracellular vesicles-based point-of-care testing for the diagnosis and monitoring of Alzheimer's disease
X. Li, J. Chen, y. yang, H. Cai, Z. Ao, Y. Xing, k. Li, K. Yang, A. Wallace, J. Friend, L. P. Lee, N. Wang, F. Guo
This paper presents an OECT-based sensor for rapid, sensitive detection of extracellular vesicles in Alzheimer's disease, showing improved sensitivity and reduced detection time.
bioRxiv · Mar 31, 2024Bioengineering
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer
X. Sun, J. A. Ferguson, K. Yang, R. L. Stanfield, J. Dyson, P. Wright
This paper investigates how mispacking of the F87 sidechain in transthyretin tetramers affects conformational dynamics and aggregation propensity through structural and biophysical analyses.
bioRxiv · Feb 26, 2024Biophysics
p24-Tango1 interactions ensure ER-Golgi interface stability and efficient transport
K. Yang, Z. Feng, J. C. Pastor-Pareja
The paper investigates Drosophila p24 proteins and finds that their interaction with Tango1 is essential for maintaining ER-Golgi interface stability and efficient transport.
bioRxiv · Feb 23, 2024 · PreprintCell Biology
Nephrectomy and high-salt diet inducing pulmonary hypertension and kidney damage by increasing Ang II concentration in rats
Y. Chen, Q. Jiang, q. yang, C. Zhang, C. Hou, w. hong, m. du, X. Shan, x. li, D. Zhou, d. wen, y. xiong, K. Yang, Z. Lin, j. song, , J. Wang
This study develops a CKD-PH rat model through 5/6 nephrectomy and high-salt diet, showing increased Ang II and RAAS imbalance, ACE2 downregulation, and metabolic changes linked to pulmonary hypertension.
bioRxiv · Jan 25, 2024Pathology
The larva and adult of Helicoverpa armigera use differential gustatory receptors to sense sugars
S.-S. Zhang, P.-C. Wang, C. Ning, K. Yang, G.-C. Li, L.-L. Cao, L.-Q. Huang, C.-Z. Wang
This study identifies differential gustatory receptors in the larvae and adults of Helicoverpa armigera that enable them to sense sugars differently based on their feeding habits.
bioRxiv · Sep 19, 2023Ecology
An Azapeptide Platform in Conjunction with Covalent Warheads to Uncover High-Potency Inhibitors for SARS-CoV-2 Main Protease
K. Khatua, Y. R. Alugubelli, K. Yang, V. Reddy, L. Blankenship, D. Coleman, S. Atla, S. Chaki, Z. Geng, X. Ma, J. Xiao, P.-H. Chen, C.-C. Cho, E. C. Vatansever, Y. Ma, , W. R. Liu
This study develops an azapeptide platform with covalent warheads to identify potent SARS-CoV-2 MPro inhibitors, including MPI89 with a 10 nM EC50 and high selectivity.
bioRxiv · Apr 11, 2023 · PreprintBiochemistry
Long-B prokaryotic Argonaute systems employ various effectors to confer immunity via abortive infection
X. Song, S. Lei, S. Liu, Y. Liu, P. Fu, Z. Zeng, K. Yang, Y. Chen, M. Li, Q. She, W. Han
The paper identifies long-B prokaryotic Argonaute systems as cell suicide mechanisms that use effector proteins to eliminate invading nucleic acids through abortive infection.
bioRxiv · Mar 9, 2023 · PreprintMicrobiology
Continuous optical detection of small-molecule analytes in complex biomatrices
A. A. Hariri, A. P. Cartwright, C. Dory, Y. Gidi, S. Yee, K. X. Fu, K. Yang, D. Wu, I. A. P. Thompson, N. Maganzini, T. Feagin, B. E. Young, B. H. Afshar, M. Eisenstein, M. Digonnet, , H. T. Soh
This paper introduces an optical biosensor system for continuous detection of biomarkers in complex samples, achieving high sensitivity and long-term monitoring of dopamine and cortisol.
bioRxiv · Mar 3, 2023 · PreprintBiophysics
Homeostatic control of an iron repressor in a GI tract resident
Y. Wang, Y. Mao, X. Chen, K. Yang, X. Huang, L. Tian, T. Jiang, Y. Zou, X. Ma, C. Xu, Z. Zhou, X. Wu, L. Pan, H. Liang, C. Chen
The paper shows that Hap43, an iron-responsive transcription factor, is degraded under high iron conditions in C. albicans, leading to antioxidant gene activation and enhanced gut colonization.
bioRxiv · Jan 30, 2023Microbiology
VHL Mutation Drives Human Clear Cell Renal Cell Carcinoma Progression Through PI3K/AKT-Dependent Cholesteryl Ester Accumulation
S. Zhang, T. Fang, Y. He, W. Feng, Z. Yu, Y. Zheng, C. Zhang, S. Hu, Z. Liu, J. Liu, J. Yu, H. Zhang, A. He, Y. Gong, Z. He, , S. Yue
This study identifies VHL mutation as a driver of CE accumulation in ccRCC through the PI3K/AKT pathway, showing that inhibiting cholesterol esterification suppresses tumor aggressiveness.
bioRxiv · Jan 2, 2023Cancer Biology
DUSP6 mediates resistance to JAK2 inhibition and drives leukemic progression
T. Kong, A. B. A. Laranjeira, K. Yang, D. Fisher, L. Yu, A. Z. Wang, M. Ruzinova, J. Fowles, M. Allen, H. Celik, G. Challen, S. Huang, S. Oh
This study identifies DUSP6 as a driver of leukemic progression and resistance to JAK2 inhibition in MPNs, highlighting the DUSP6-RSK1 axis as a therapeutic target.
Nature Cancer · Dec 29, 2022Peer-reviewedCancer Biology
Canonical and Replicable Multi-Scale Intrinsic Connectivity Networks in 100k+ Resting-State fMRI Datasets
Armin Iraji, Zening Fu, Ashkan Faghiri, Marlena Duda, J. Chen, Srinivas Rachakonda, Thomas P. DeRamus, Peter V Kochunov, Bhim Mani Adhikari, Ayşenil Belger, Judith M. Ford, Daniel H. Mathalon, Godfrey D. Pearlson, Steven G. Potkin, Adrian Preda, , Vince D. Calhoun
The paper develops a reliable network template and methods to estimate individualized functional networks from resting-state fMRI data across 100k+ individuals, showing how data length and spatial resolution affect network estimation.
bioRxiv · Sep 3, 2022 · PreprintNeuroscience
Destabilized 3UTR ARE therapeutically degrades ERBB2 in drug-resistant ERBB2+ cancer models
C. Awah, Y. Glemaud, F. Levine, K. Yang, A. Ansary, F. Dong, L. Ash, J. Zhang, D. Weiser, O. O. Ogunwobi
The paper develops a method to degrade ERBB2 mRNA and protein by destabilizing its 3UTR AU-rich elements, showing efficacy in drug-resistant cancer models.
bioRxiv · Aug 14, 2022 · PreprintCancer Biology
Nanomolar inhibition of SARS-CoV-2 infection by an unmodified peptide targeting the pre-hairpin intermediate of the spike protein
K. Yang, C. Wang, A. J. B. Kreutzberger, R. Ojha, S. Kuivanen, S. Couoh-Cardel, S. Muratcioglu, T. J. Eisen, K. I. White, R. G. Held, S. Subramanian, K. Marcus, R. A. Pfuetzner, L. Esquivies, C. A. Doyle, , A. T. Brunger
bioRxiv · Aug 11, 2022Microbiology
Multiplexed analysis of a single EV (MASEV) reveals unique biomarker composition with diagnostic impact
J. Spitzberg, S. Ferguson, K. Yang, H. Peterson, J. C. T. Carlson, R. Weissleder
The paper introduces MASEV, a method for analyzing single EVs, and finds that common EV markers are rare, biomarkers co-occur in few vesicles, affinity purification loses rare subtypes, and deep profiling improves diagnostic potential.
bioRxiv · Jun 17, 2022 · PreprintCancer Biology
The Nucleocapsid Protein Of SARS-CoV-2, Combined With ODN-39M, Is A Potential Component For An Intranasal Bivalent Pancorona Vaccine
Y. Lobaina, R. Chen, E. Suzarte, P. Ai, V. Huerta, A. Musacchio, R. Silva, C. Tan, A. Martin, L. Lazo, G. Guillen, K. Yang, Y. Perera, L. Hermida
This paper evaluates a bivalent intranasal vaccine candidate combining SARS-CoV-2 N protein and ODN-39M, showing cross-reactive immunity against SARS-CoV-1 and enhanced Th1 response when combined with RBD.
bioRxiv · Jun 2, 2022 · PreprintImmunology
Ex vivo to in vivo model of malignant peripheral nerve sheath tumors for precision oncology
H. Bhatia^, A. T. Larsson^, A. Calizo^, K. Pollard, X. Zhang, E. Conniff, J. F. Tibbitts, S. H. Osum, K. B. Williams, A. L. Crampton, T. Jubenville, D. Schefer, K. Yang, Y. Lyu, J. Bade, , A. C. Hirbe
The paper develops an ex vivo 3D microtissue model of MPNST that captures genomic diversity and predicts in vivo drug response.
bioRxiv · Apr 29, 2022 · PreprintCancer Biology
Interfered Chromosome Pairing Promotes Meiosis Instability of Autotetraploid Arabidopsis by High Temperatures
H. Fu, J. Zhao, Z. Ren, K. Yang, C. Wang, X. Zhang, I. E. Elesawi, J. Xia, C. Chen, P. Lu, Y. Chen, H. Liu, G. Yu, B. Liu
This study shows that increased temperatures disrupt meiotic stability in autotetraploid Arabidopsis by interfering with chromosome pairing and crossing-over.
Plant Physiology · Dec 20, 2021Peer-reviewedPlant Biology
The N-Terminal Carbamate is Key to High Cellular and Antiviral Potency for Boceprevir-Based SARS-CoV-2 Main Protease Inhibitors
Y. R. Alugubelli, Z. Z. Geng, K. Yang, N. Shaabani, K. Khatua, X. R. Ma, E. C. Vatansever, C.-C. Cho, Y. Ma, L. Blankenship, G. Yu, B. Sankaran, P. Li, R. Allen, H. Ji, , W. R. Liu
This paper identifies that a P4 N-terminal carbamate in boceprevir-based inhibitors is crucial for high antiviral potency against SARS-CoV-2.
bioRxiv · Dec 18, 2021 · PreprintBiochemistry
The P3 O-Tert-Butyl-Threonine is Key to High Cellular and Antiviral Potency for Aldehyde-Based SARS-CoV-2 Main Protease Inhibitors
Y. Ma, K. Yang, Z. Z. Geng, Y. R. Alugubellia, N. Shaabani, E. C. Vatansever, X. R. Ma, C.-C. Cho, K. Khatua, L. Blankenship, G. Yu, B. Sankaran, P. Li, R. Allen, H. Ji, , W. R. Liu
This study identifies O-tert-butyl-threonine at the P3 site as critical for enhancing cellular and antiviral potency of MPro inhibitors.
bioRxiv · Dec 18, 2021 · PreprintBiochemistry
Broad ultra-potent neutralization of SARS-CoV-2 variants by monoclonal antibodies specific to the tip of RBD
H. Ma, Y. Guo, H. Tang, C.-T. Tseng, L. Wang, H. Zong, Z. Wang, Y. He, Y. Chang, S. Wang, H. Huang, Y. Ke, Y. Yuan, M. Wu, Y. Zhang, , J. Zhu
This paper identifies a monoclonal antibody, 2G1, that neutralizes all SARS-CoV-2 variants with high potency and describes its mechanism of action and therapeutic efficacy in animal models.
bioRxiv · Sep 24, 2021Cell Biology
Early-life microbial intervention reduces colitis risk promoted by antibiotic-induced gut dysbiosis
J. Miyoshi, S. Miyoshi, T. O. Delmont, C. Cham, S. T. M. Lee, A. Sakatani, K. Yang, Y. Shan, E. Kiefl, M. Yousef, S. Crosson, M. Sogin, D. A. Antonopoulos, A. M. Eren, V. Leone, E. B. Chang
The paper shows that adding a specific Bacteroides strain early in life reduces colitis risk in genetically susceptible mice with antibiotic-induced gut dysbiosis.
Gastroenterology · Sep 1, 2021Peer-reviewedMicrobiology
TMT-based proteomic analysis of the antibiotic effects of ShangKeHuangShui against Straphylococcus aureus.
L. Liu, N. Zhao, K. Yang, H. Liao, X. Liu, Y. Wu, L. Lei, X. Peng, Y. Wu
This study uses TMT-based proteomics to analyze the antibacterial effects of YACTH against Staphylococcus aureus, identifying 490 differentially expressed proteins and their biological pathways.
bioRxiv · Jul 22, 2021 · PreprintMicrobiology
Wireless endovascular nerve stimulation with a millimeter-sized magnetoelectric implant
J. C. Chen, P. Kan, Z. Yu, F. Alrashdan, R. Garcia, A. C. Singer, C. S. E. Lai, B. Avants, S. Crosby, M. M. Felicella, A. Robledo, J. D. Hartgerink, S. A. Sheth, K. Yang, J. T. Robinson
This paper introduces a millimeter-sized wireless implant for endovascular nerve stimulation, demonstrating its ability to target peripheral nerves with minimal invasiveness and reduced risk compared to traditional methods.
bioRxiv · Jul 6, 2021Bioengineering
Land-surface evapotranspiration derived from a first-principles primary production model
S. Tan, H. Wang, C. Prentice, K. Yang
The paper develops an evapotranspiration model based on eco-evolutionary principles, showing good agreement with observed data across multiple sites.
bioRxiv · Jun 23, 2021Ecology
Expression of extracellular Hsp90 is a molecular signature of T cell activation, providing a means to image and target T Cell activation in autoimmune disease
S. Scarneo, A. Smith, J. Favret, R. O'connell, J. Pickeral, K. Yang, G. Ferrari, D. Loiselle, P. Hughes, M. Kulkarni, M. Gargesha, B. Scott, D. Roy, B. Haynes, J. Kweik, T. Haystead
This study identifies eHsp90 as a marker of T cell activation, showing its upregulation in autoimmune diseases and demonstrating the efficacy of an inhibitor in delaying disease progression.
bioRxiv · Jun 6, 2021 · PreprintPharmacology & Toxicology
Mechanistic Insights of High Temperature-Interfered Meiosis in Autotetraploid Arabidopsis thaliana
H. Fu, K. Yang, X. Zhang, J. Zhao, I. E. Elesawi, H. Liu, J. Xia, G. Yu, C. Chen, C. Wang, B. Liu
This study investigates how high temperatures affect meiosis in autotetraploid Arabidopsis thaliana, revealing that heat stress disrupts chromosome axis stability and meiotic recombination.
bioRxiv · May 5, 2021 · PreprintPlant Biology